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PacRAT: A program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.06.467314Source: DataRank Database

PacRAT: A program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2021). On theSindex it has a DataRank of 0.

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)OA: greenTopics (23)IDs (PubMed, OpenAlex)

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Open Access

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Authors (4)

Clara J. Amorosi ORCID,Soyeon Showman ORCID,Maitreya J. Dunham ORCID,Chiann-Ling C Yeh ORCID

Live enrichment

PubMed:21097893 OpenAlex:https://openalex.org/W3215609623

National Science Foundation

Grant: 1762114

Graduate Research Fellowship Program (GRFP)

National Institutes of Health

Grant: 5T32HG000035-04

INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCE

National Institutes of Health

Grant: 5R01GM101091-06

Genetic basis of stress tolerance in natural populations of yeast

National Institutes of Health

Grant: 5R01GM132162-03

Comprehensive, context-aware, functional analysis of Cytochrome P450 variants

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2021/11/08/2021.11.06.467314.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2021.11.06.467314

repositoryhttps://doi.org/10.1101/2021.11.06.467314

https://doi.org/10.1093/bioinformatics/btac165

Fields of Study

Genomics and Phylogenetic StudiesEnvironmental DNA in Biodiversity StudiesGenomics and Rare Diseases0301 basic medicine0303 health sciences03 medical and health sciences

Keywords

BarcodePython (programming language)Computer scienceComputational biologyDNA sequencingData miningInformation retrievalBiologyGeneticsProgramming languageDNAOperating systemHigh-Throughput Nucleotide SequencingSequence Analysis, DNASequence AlignmentAlgorithmsSoftware