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A deep population reference panel of tandem repeat variation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.09.531600Source: DataRank Database

A deep population reference panel of tandem repeat variation is a dataset published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0.698, placing it in the top 28.6% of the data-sharing corpus. It has been cited 12 times, with 10 citing works in its 1-hop citation network.

Top 29%percentile

0.698DataRank

Ranks in the top 29% for downstream scientific impact

Data paper Open Access12 citations · 10 citing works in its network

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (10 grants)OA: greenTopics (49)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 55%Citation Network 45%

Base Score Contribution

0.385

From this paper's citation signal

Citation Network Contribution

0.313

From 10 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 10 citers.

Adaptive Long‐Read Sequencing Reveals GGC Repeat Expansion in ZFHX3 Associated with Spinocerebellar Ataxia Type 4
Movement Disorders202449 citations38 referencesContributes 0.103
Insights from a genome-wide truth set of tandem repeat variation
bioRxiv (Cold Spring Harbor Laboratory)202312 citations47 referencesContributes 0.055
Medically relevant tandem repeats in nanopore sequencing of control cohorts
medRxiv20243 citations27 referencesContributes 0.051
Detection and discovery of repeat expansions in ataxia enabled by next-generation sequencing: present and future
Emerging Topics in Life Sciences202311 citations73 referencesContributes 0.034
Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain
Nature Genetics202515 citations86 referencesContributes 0.032

Authors (22)

Yang Li ORCID,Ross DeVito ORCID,Nima Mousavi ORCID,Nichole Ma ORCID,Ibra Lujumba ORCID

Live enrichment

PubMed:36945429 OpenAlex:https://openalex.org/W4323978464

National Institutes of Health

Grant: 3RM1HG011558-02S1

Genetic & Social Determinants of Health: Center for Admixture Science and Technology

National Institutes of Health

Grant: 5R01HG010885-04

Systematic characterization of tandem repeat variants contributing to complex traits

National Institutes of Health

Grant: 1U2RTW010672-01

NURTURING GENOMICS AND BIOINFORMATICS RESEARCH CAPACITY IN AFRICA (BRecA)

National Institutes of Health

Grant: 5U24HG006941-07

H3ABioNet: informatics solutions for H3Africa

National Institutes of Health

Grant: 5U2RTW010679-05

WEST AFRICAN SUSTAINABLE LEADERSHIP AND INNOVATION TRAINING IN BIOINFORMATICS RESEARCH (WASLITBRe)

National Institutes of Health

Grant: 2R01HG010149-05

Refining Mendelian disease analysis via detection of clinically relevant repeat variants

National Institutes of Health

Grant: 5U2RTW010672-04

NURTURING GENOMICS AND BIOINFORMATICS RESEARCH CAPACITY IN AFRICA (BRecA)

National Institutes of Health

Grant: 3U2CEB032224-04S1

eLwazi Open Data Science Platform and Coordinating Center

National Institutes of Health

Grant: 2R01GM114362-05

Computational methods for detecting patterns of complex genomic variation

National Institutes of Health

Grant: 1U2CEB032224-01

eLwazi Open Data Science Platform and Coordinating Center

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/03/12/2023.03.09.531600.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.03.09.531600

repositoryhttps://doi.org/10.1101/2023.03.09.531600

repositoryhttps://pubmed.ncbi.nlm.nih.gov/36945429

Fields of Study

Genomics and Phylogenetic StudiesGenetic Neurodegenerative DiseasesMolecular Biology Techniques and Applications0301 basic medicine03 medical and health sciences

Keywords

HaplotypeBiologyGeneticsGenomeSingle-nucleotide polymorphismReference genomePopulationTandem repeatGenetic variationLoss of heterozygosityMicrosatelliteGenome-wide association studyComputational biologyGenotype1000 Genomes ProjectGeneAlleleMedicineSingle Nucleotide (mesh)Science610Biotechnology (rcdc)3105 Genetics (for-2020)Polymorphism, Single NucleotideArticle576HumansTandem Repeat Sequences (mesh)PolymorphismHumans (mesh)31 Biological Sciences (for-2020)Whole Genome SequencingGenetics (rcdc)Genotype (mesh)Human GenomeGeneric health relevance (hrcs-hc)QSingle NucleotideBiological SciencesHuman Genome (rcdc)Whole Genome Sequencing (mesh)Tandem Repeat SequencesGeneric health relevanceBiotechnology