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A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.22.541750Source: DataRank Database

A rigorous benchmarking of alignment-based HLA typing algorithms for RNA-seq data is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0. It has been cited 5 times.

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Open Access5 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (4 grants)OA: greenTopics (24)IDs (PubMed, OpenAlex)SDGs (1)

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Open Access

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Reusable (0/3)

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Authors (17)

Ram Ayyala ORCID,Sarah Hany Sadek,Likhitha Chittampalli ORCID,Hafsa Farooq ORCID,Junghyun Jung ORCID

Live enrichment

PubMed:38293199 OpenAlex:https://openalex.org/W4377965860

National Institutes of Health

Grant: 5R01AI173172-03

Developing robust and scalable genomics tools and databases to analyze immune receptor repertoires across broad populations

National Science Foundation

Grant: 2316223

RCN-UBE: Sustainable, nationwide network to promote reproducible big-data analysis in biology programs within community colleges and minority-serving institutions

National Science Foundation

Grant: 2041984

CAREER: Developing efficient and scalable bioinformatics methods and databases to analyze the adaptive immune repertoires of vertebrate species

NIAID NIH HHS

Grant: R01 AI173172

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/05/24/2023.05.22.541750.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.05.22.541750

repositoryhttps://doi.org/10.1101/2023.05.22.541750

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38293199

Fields of Study

T-cell and B-cell ImmunologyImmune Cell Function and InteractionCytomegalovirus and herpesvirus research0206 medical engineering02 engineering and technology

Keywords

BenchmarkingHuman leukocyte antigenComputer scienceMatching (statistics)Gold standard (test)LimitingTypingIdentification (biology)Data miningMachine learningComputational biologyAlgorithmGeneticsBiologyMathematicsAntigenStatisticsEngineeringArticle

Sustainable Development Goals

SDG 3: 3. Good health