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Single-cell transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states associated with senescence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.25.542370Source: DataRank Database

Single-cell transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states associated with senescence is a dataset published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0.532, placing it in the top 36.5% of the data-sharing corpus. It has been cited 11 times, with 10 citing works in its 1-hop citation network.

Top 37%percentile

0.532DataRank

Ranks in the top 37% for downstream scientific impact

Data paper Open Access11 citations · 10 citing works in its network

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Transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states · Dryad

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (13 grants)OA: greenTopics (19)Linked Datasets (1)DataCite Reuse (1)IDs (PubMed, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 70%Citation Network 30%

Base Score Contribution

0.373

From this paper's citation signal

Citation Network Contribution

0.159

From 8 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 10 citers.

Single-nucleus RNA sequencing and lipidomics reveal characteristics of transcriptional and lipid composition in porcine longissimus dorsi muscle
BMC Genomics202424 citations83 referencesContributes 0.039
A comprehensive single-cell RNA transcriptomic analysis identifies a unique SPP1+ macrophages subgroup in aging skeletal muscle
Scientific Reports202410 citations68 referencesContributes 0.035
Single-cell transcriptomic analysis reveals alterations to cellular dynamics and paracrine signaling in radiation-induced muscle pathology
American Journal of Physiology-Cell Physiology20257 citations69 referencesContributes 0.030
Cellular senescence of renal tubular epithelial cells in acute kidney injury
Cell Death Discovery202480 citations175 referencesContributes 0.025
Muscle stem cells in Duchenne muscular dystrophy exhibit molecular impairments and altered cell fate trajectories impacting regenerative capacity
bioRxiv (Cold Spring Harbor Laboratory)20243 citations78 referencesContributes 0.018

Authors (7)

Jessica L. Orton ORCID,Ern Hwei Hannah Fong ORCID,Viviana I. Maymí ORCID,Brian D. Rudd ORCID,Jennifer H. Elisseeff ORCID

Live enrichment

PubMed:37292698 OpenAlex:https://openalex.org/W4378363599

National Institutes of Health

Grant: 1T32HD057854-01A2

Research and career training in vertebrate developmental genomics

National Institutes of Health

Grant: 3R37AG007977-12S2

LONGITUDINAL STUDY OF GENERATIONS AND MENTAL HEALTH

National Institutes of Health

Grant: 5R01AI105265-05

Mechanisms limiting neonatal immunity

National Institutes of Health

Grant: 5R01AG058630-04

Revealing muscle stem cell heterogeneity in mice and humans through deep single-cell analysis

National Institutes of Health

Grant: 5F30OD032097-04

Regulation of CD8+ T cell exhaustion by let-7/Lin28b in different stages of life

National Institutes of Health

Grant: 5DP1AR076959-02

Biomaterials-directed regenerative immunotherapies

NIH HHS

Grant: F30 OD032097

NIA NIH HHS

Grant: R01 AG058630

NIA NIH HHS

Grant: R56 AG007977

NICHD NIH HHS

Grant: T32 HD057854

NIAID NIH HHS

Grant: R01 AI105265

NIA NIH HHS

Grant: R01 AG007977

NIAMS NIH HHS

Grant: DP1 AR076959

greenLicense: cc-by-nc-nd

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/05/26/2023.05.25.542370.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.05.25.542370

repositoryhttps://doi.org/10.1101/2023.05.25.542370

repositoryhttps://pubmed.ncbi.nlm.nih.gov/37292698

Fields of Study

Muscle Physiology and DisordersTelomeres, Telomerase, and SenescenceSingle-cell and spatial transcriptomics0303 health sciences03 medical and health sciences

Keywords

SenescenceBiologyRegeneration (biology)TranscriptomeStem cellSkeletal muscleCell biologyMyocyteCellAnatomyGeneGene expressionGeneticsArticle

Transcriptomic analysis of skeletal muscle regeneration across mouse lifespan identifies altered stem cell states

10.5061/dryad.kkwh70sbvDryad