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AptamerRunner: An accessible aptamer structure prediction and clustering algorithm for visualization of selected aptamers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.13.566453Source: DataRank Database

AptamerRunner: An accessible aptamer structure prediction and clustering algorithm for visualization of selected aptamers is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0. It has been cited 1 time.

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Enrichment:Funding (7 grants)OA: greenTopics (39)IDs (PubMed, OpenAlex)

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Authors (6)

Suresh Veeramani ORCID,Eric Embree,Chris Ortman,Kristina W. Thiel ORCID,William H. Thiel ORCID

Live enrichment

PubMed:38014343 OpenAlex:https://openalex.org/W4388713603

National Science Foundation

Grant: 1817239

III: Small: RUI: Designing Structure-Phenotype Query-Retrieval and Analysis Systems for Microscopy-Based Whole Organism Studies

National Institutes of Health

Grant: 5R01HL157956-03

Leveraging the mitochondrial regulator MIRO1 to prevent neointimal hyperplasia

National Institutes of Health

Grant: 1R01HL139581-01A1

Deciphering mechanisms of vascular disease with cell and process specific ligands

National Institutes of Health

Grant: 5K22CA263783-02

Attacking aggressive p53 mutants in gynecologic cancer

NCI NIH HHS

Grant: K22 CA263783

NIAID NIH HHS

Grant: R01 AI057956

NHLBI NIH HHS

Grant: R01 HL139581

greenLicense: cc-by-nc-nd

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/11/15/2023.11.13.566453.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.11.13.566453

repositoryhttps://doi.org/10.1101/2023.11.13.566453

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38014343

Fields of Study

RNA and protein synthesis mechanismsAdvanced biosensing and bioanalysis techniquesMachine Learning in Bioinformatics0301 basic medicine03 medical and health sciences0303 health sciences

Keywords

AptamerCluster analysisVisualizationComputer scienceAlgorithmData miningArtificial intelligenceBiologyMolecular biologyTÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS::técnicas de investigación::técnicas genéticas::análisis de secuencias::secuenciación de nucleótidos de alto rendimientoSTRUCTUREsequence analysisAptamerRunnerRM1-950Biologia computacionalArticleANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT::Investigative Techniques::Genetic Techniques::Sequence Analysis::High-Throughput Nucleotide Sequencinghttps://purl.org/becyt/ford/1.6CYTOSCAPEhttps://purl.org/becyt/ford/1Seqüència de nucleòtidsAPTAMERSOligonucleòtidsbioinformaticsCHEMICALS AND DRUGS::Nucleic Acids, Nucleotides, and Nucleosides::Nucleotides::Polynucleotides::Oligonucleotides::Aptamers, Nucleotidestructure analysisCLUSTERING ALGORTIHMSMT: BioinformaticsCIENCIA DE LA INFORMACIÓN::Ciencias de la información::informática::biología computacionalCOMPUESTOS QUÍMICOS Y DROGAS::nucleótidos y nucleósidos de ácidos nucleicos::nucleótidos::polinucleótidos::oligonucleótidos::aptámeros de nucleótidosOriginal ArticleTherapeutics. PharmacologyINFORMATION SCIENCE::Information Science::Informatics::Computational Biology