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Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.15.567129Source: DataRank Database

Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification is a research paper published in bioRxiv (Cold Spring Harbor Laboratory) (2023). On theSindex it has a DataRank of 0. It has been cited 3 times.

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Open Access3 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (3 grants)OA: greenTopics (35)IDs (PubMed, OpenAlex)

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Authors (2)

Ben Langmead ORCID,Li Song ORCID

Live enrichment

PubMed:38014029 OpenAlex:https://openalex.org/W4388752335

National Institutes of Health

Grant: 3P20GM130454-05S2

NOSI cloud computing Supplement

National Institutes of Health

Grant: 5R35GM139602-02

Methods for sequencing data analysis and archive-scale data science

National Institutes of Health

Grant: 2R01HG011392-06

Personal and panel references for improved alignment

greenLicense: cc-by-nc

repositoryhttps://www.biorxiv.org/content/biorxiv/early/2023/11/17/2023.11.15.567129.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/2023.11.15.567129

repositoryhttps://doi.org/10.1101/2023.11.15.567129

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38014029

Fields of Study

Genomics and Phylogenetic StudiesAlgorithms and Data CompressionMachine Learning in Bioinformatics0206 medical engineering02 engineering and technology

Keywords

Lossless compressionRefSeqComputer scienceMemory footprintData compressionMetagenomicsCompression (physics)Block (permutation group theory)Compression ratioGenomeData miningAlgorithmMathematicsBiologyGeneticsCombinatoricsGeneEngineeringQH301-705.5Sequence Analysis, DNAQH426-470ArticleMetagenomicCompact data structureGenome, Microbialr-indexBiology (General)FM-indexSoftwareGenome, Bacterial