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Evolution of genome structure in the Drosophila simulans species complex

Genome Research(2021)10.1101/gr.263442.120Source: DataRank Database

Evolution of genome structure in the Drosophila simulans species complex is a dataset published in Genome Research (2021). On theSindex it has a DataRank of 2.3, placing it in the top 9.4% of the data-sharing corpus. It has been cited 117 times, with 95 citing works in its 1-hop citation network.

Top 9%percentile

2.3DataRank

Ranks in the top 9% for downstream scientific impact

Data paper Open Access117 citations · 95 citing works in its network

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DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (19 grants)OA: bronzeTopics (57)IDs (PubMed, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (1/3)

Dataset classification

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DataRank Breakdown

Base Score 31%Citation Network 69%

Base Score Contribution

0.716

From this paper's citation signal

Citation Network Contribution

1.6

From 75 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 95 citers.

Defective Satellite DNA Clustering into Chromocenters Underlies Hybrid Incompatibility in Drosophila
Molecular Biology and Evolution202147 citations45 referencesContributes 0.086
Satellite DNA-mediated diversification of a sex-ratio meiotic drive gene family in Drosophila
Nature Ecology & Evolution202151 citations51 referencesContributes 0.077
A flurry of sex-ratio distorters
Nature Ecology & Evolution20211 citations11 referencesContributes 0.063
Patterns of crossover distribution in Drosophila mauritiana necessitate a re-thinking of the centromere effect on crossing over
Genetics20259 citations42 referencesContributes 0.055
Highly contiguous assemblies of 101 drosophilid genomes
eLife2021226 citations102 referencesContributes 0.053

Authors (10)

Ching-Ho Chang ORCID,Danielle E. Khost ORCID,Jeffrey Vedanayagam ORCID,Jeffrey R. Adrion ORCID,Yi Liao ORCID

Live enrichment

PubMed:33563718 OpenAlex:https://openalex.org/W3128593802

NIH

Grant: K99GM129411

NIH

Grant: R35GM119515

NIH

Grant: R01GM123303

NIH

Grant: R01GM123194

National Science Foundation

Grant: NSF MCB 1844693

National Science Foundation

Grant: NSF DDIG 1209536

National Science Foundation

Grant: IOS-1656260

National Science Foundation

Grant: NSF GRFP 1342962

Genomics High-Throughput Facility Shared Resource of the Cancer Center

Grant: CA-62203

NIH

Grant: 1S10RR025496-01

High Throughput DNA Sequencer

NIH

Grant: 1S10OD010794-01

PacBio RS Single Molecule, Real-Time (SMRT) DNA Sequencer

NIH

Grant: 1S10OD021718-01

High-Throughput DNA Sequencer

National Institutes of Health

Grant: 5R35GM119515-08

The evolutionary and functional genomics of satellite DNA

National Science Foundation

Grant: 1844693

CAREER: The evolution of centromere organization in Drosophila

National Institutes of Health

Grant: 5R01GM123303-02

Structural variation population size and the evolution of genome complexity

National Institutes of Health

Grant: 5R01GM123194-03

Investigating the special role of sex chromosomes in speciation: discovering the molecular identities, functions, and evolutionary histories of X-linked hybrid male sterility genes in Drosophila

National Science Foundation

Grant: 1342962

Graduate Research Fellowship Program (GRFP)

National Science Foundation

Grant: 1209536

DISSERTATION RESEARCH: Evolutionary Genomics of piRNA-Mediated Transposon Silencing in Drosophila

National Institutes of Health

Grant: 1K99GM129411-01A1

Evolutionary and functional consequences of structural genetic variation in Drosophila

bronzeLicense: CC BY

journalhttps://genome.cshlp.org/content/31/3/380.full.pdf

publisherhttps://genome.cshlp.org/content/31/3/380.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.263442.120

journalhttps://doi.org/10.1101/gr.263442.120

repositoryhttps://pubmed.ncbi.nlm.nih.gov/33563718

Fields of Study

Chromosomal and Genetic VariationsGenomics and Phylogenetic StudiesGenetic diversity and population structure0301 basic medicine03 medical and health sciences0303 health sciences

MeSH Terms

Drosophila simulansAnimalsDNA Transposable ElementsDNA, SatelliteDrosophila melanogasterFemaleMaleEvolution, MolecularGenome, InsectDNA Copy Number Variations

Keywords

BiologyGenomeGeneticsTransposable elementEuchromatinGenome evolutionEvolutionary biologySyntenyMelanogasterHeterochromatinComparative genomicsSatellite DNAGeneDrosophila melanogasterGenomicsChromosomeMale570DNA Copy Number VariationsEvolutionBioinformatics1.1 Normal biological development and functioningGenome, InsectBioinformatics and Computational BiologyDNA, SatelliteMedical and Health SciencesEvolution, MolecularAnimalsResearchHuman GenomeLife SciencesMolecularDNABiological SciencesSatelliteDNA Transposable ElementsDrosophila simulansFemaleGeneric health relevanceInsectBiotechnology

Sustainable Development Goals

SDG 0: Life in Land