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Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data

Genome Research(2020)10.1101/gr.265173.120Source: DataRank Database

Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data is a research paper published in Genome Research (2020). On theSindex it has a DataRank of 0. It has been cited 62 times.

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Open Access62 citations

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Enrichment:Funding (9 grants)OA: bronzeTopics (24)Linked Datasets (25)DataCite Reuse (25)IDs (PubMed, PMC, OpenAlex)Annotations (1)

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Authors (2)

Ting Wang ORCID,Wanqing Shao ORCID

Live enrichment

PubMed:33355230 PMC:PMC7849386 OpenAlex:https://openalex.org/W3116220714

National Institutes of Health

Grant: R01HG007175

National Institutes of Health

Grant: U24ES026699

National Institutes of Health

Grant: U01CA200060

National Institutes of Health

Grant: U01HG009391

National Institutes of Health

Grant: U41HG010972

NIMH NIH HHS

Grant: U19 MH114830

NHGRI NIH HHS

Grant: UM1 HG011585

NIDA NIH HHS

Grant: R25 DA027995

NHGRI NIH HHS

Grant: U24 HG007234

bronze

journalhttps://genome.cshlp.org/content/31/1/88.full.pdf

publisherhttps://genome.cshlp.org/content/31/1/88.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.265173.120

journalhttps://doi.org/10.1101/gr.265173.120

repositoryhttps://pubmed.ncbi.nlm.nih.gov/33355230

Fields of Study

Chromosomal and Genetic VariationsRNA modifications and cancerCRISPR and Genetic Engineering

MeSH Terms

RNA-SeqAnimalsDNA Transposable ElementsRNA, UntranslatedOrganogenesisEmbryonic DevelopmentMiceSingle-Cell AnalysisTranscriptome

Keywords

BiologyTranscriptomeTransposable elementEmbryonic stem cellRNA-SeqComputational biologyRNAGene expressionGeneticsGeneCell biologyGenome

Additional file 10 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678815.v1figshare

Additional file 10 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678815figshare

Additional file 11 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678818.v1figshare

Additional file 11 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678818figshare

Additional file 1 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678839.v1figshare

Additional file 1 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678839figshare

Additional file 2 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678842.v1figshare

Additional file 2 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678842figshare

Additional file 3 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678845.v1figshare

Additional file 3 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678845figshare

Additional file 4 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678848.v1figshare

Additional file 4 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678848figshare

Additional file 5 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678851.v1figshare

Additional file 5 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678851figshare

Additional file 6 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678854.v1figshare

Additional file 6 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678854figshare

Additional file 7 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678857figshare

Additional file 7 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678857.v1figshare

Additional file 8 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678860.v1figshare

Additional file 8 of SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution

10.6084/m9.figshare.20678860figshare

Transcript assembly improves expression quantification of transposable elements in single-cell RNA-seq data

FAIR Checklist

Authors (2)

Funding (9 grants)

Open Access

Topics

Linked Datasets (25)

Annotations (Europe PMC)