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Binding profiles for 961DrosophilaandC. eleganstranscription factors reveal tissue-specific regulatory relationships

Genome Research(2024)10.1101/gr.279037.124Source: DataRank Database

Binding profiles for 961DrosophilaandC. eleganstranscription factors reveal tissue-specific regulatory relationships is a research paper published in Genome Research (2024). On theSindex it has a DataRank of 0.416. It has been cited 10 times, with 9 citing works in its 1-hop citation network.

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0.416DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access10 citations · 9 citing works in its network

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Data availability

Repositories this paper deposited data in (declared in PubMed).

GEOGSE271850 GSE280245

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (17 grants)OA: greenTopics (36)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 87%Citation Network 13%

Base Score Contribution

0.360

From this paper's citation signal

Citation Network Contribution

0.0560

From 4 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 9 citers.

TF2TG: an online resource mining the potential gene targets of transcription factors in Drosophila
Genetics20251 citations28 referencesContributes 0.025
Transcriptional control of C. elegans male tail tip morphogenesis by DMD-3
Genetics20253 citations85 referencesContributes 0.016
Neural Circuit Remodeling: Mechanistic Insights from Invertebrates
Journal of Developmental Biology20244 citations125 referencesContributes 0.013
Construction of Phylogenetic Relationships Based on 8-mer Spectra Distribution Characteristics of Vertebrate Whole Genome Sequences
Genes20251 citations58 referencesContributes 0.012
An updated compendium of Caenorhabditis elegans RNA-binding proteins and their regulation
G3 Genes Genomes Genetics20250 citations37 referencesContributes 0.000

Authors (25)

Louis Gevirtzman ORCID,Alec Victorsen ORCID,Bridget C. Lear ORCID,Jiahao Gao ORCID,Jinrui Xu ORCID

Live enrichment

PubMed:39438113 PMC:PMC11694743 OpenAlex:https://openalex.org/W4403636482

National Institutes of Health

Grant: 1S10OD030363-01A1

High Performance Computing Instrumentation for the Yale Center for Genome Analysis

National Institutes of Health

Grant: U41HG007355

National Institutes of Health

Grant: R01GM76655

Office of Research Infrastructure Programs

Grant: P40 OD-018537

Office of Research Infrastructure Programs

Grant: P40 OD-010440

National Cancer Institute, Comprehensive Cancer Center

Grant: P30CA014599

NIH HHS

Grant: S10 OD030363

NIH HHS

Grant: P40 OD018537

NIH HHS

Grant: P40 OD010440

NIGMS NIH HHS

Grant: R01 GM076655

National Institutes of Health

Grant: 3P30CA014599-36S1

Cancer Center Support Grant

National Institutes of Health

Grant: 1P40OD010440-01

Caenorhabditis Genetics Center

National Institutes of Health

Grant: 2R01GM076655-09A1

Patterned Gene Expression in Drosophila Development

National Institutes of Health

Grant: 3P40OD018537-04S1

Bloomington Drosophila Stock Center at Indiana University

National Institutes of Health

Grant: 5U41HG007355-08

Creating Comprehensive Maps of Worm and Fly Transcription Factor Binding Sites

National Institute of General Medical Sciences

Bloomington Drosophila Stock Center

greenLicense: cc-by-nc

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC11694743/pdf/2319.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.279037.124

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/11694743

journalhttps://doi.org/10.1101/gr.279037.124

Fields of Study

Genetics, Aging, and Longevity in Model OrganismsGene Regulatory Network AnalysisCRISPR and Genetic Engineering

MeSH Terms

AnimalsBinding SitesChromatinDrosophila melanogasterOrgan SpecificityProtein BindingTranscription FactorsCaenorhabditis elegansDrosophila ProteinsCaenorhabditis elegans Proteins

Keywords

BiologyDrosophila melanogasterCaenorhabditis elegansTranscription factorChromatinComputational biologyChromatin immunoprecipitationModel organismENCODEGeneticsGenomeDNA binding siteGenePromoterGene expressionBinding SitesOrgan SpecificityAnimalsDrosophila ProteinsCaenorhabditis elegans ProteinsResourcesTranscription FactorsProtein Binding