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Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution

Genome Research(2025)10.1101/gr.279372.124Source: DataRank Database

Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution is a research paper published in Genome Research (2025). On theSindex it has a DataRank of 0.309. It has been cited 6 times, with 6 citing works in its 1-hop citation network.

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0.309DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access6 citations · 6 citing works in its network

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Data availability

Repositories this paper deposited data in (declared in PubMed).

GEOGSE261907

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (17 grants)OA: hybridTopics (43)IDs (PubMed, PMC, OpenAlex)Annotations (2)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 95%Citation Network 5%

Base Score Contribution

0.292

From this paper's citation signal

Citation Network Contribution

0.0168

From 1 citing papers with measurable signal

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Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 6 citers.

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Industrial Crops and Products20261 citations35 referencesContributes 0.020
Integrative multi-omics analysis of Polypterus fin regeneration reveals shared and derived fin and limb regeneration mechanisms
bioRxiv (Cold Spring Harbor Laboratory)20250 citations98 referencesContributes 0.000
Early epigenetic priming of regeneration studied with a novel transgenic epigenetic reporter
bioRxiv (Cold Spring Harbor Laboratory)20250 citations71 referencesContributes 0.000
Buffering of genetic defects in animal development by regeneration programs
bioRxiv (Cold Spring Harbor Laboratory)20250 citations43 referencesContributes 0.000
Comparative multi-omic analysis reveals conserved and derived mechanisms of fin and limb regeneration
Nature Communications20260 citations86 referencesContributes 0.000

Authors (11)

Yiran Hou ORCID,Qinglin Zeng,Irène Wang ORCID,Meiru Shang,Kwangdeok Shin

Live enrichment

PubMed:39809530 PMC:PMC11789645 OpenAlex:https://openalex.org/W4406364180

National Institutes of Health

Grant: R01HG007175

National Institutes of Health

Grant: R01AG078964

National Institutes of Health

Grant: R01AG083568

National Institutes of Health

Grant: U24NS132103

National Institutes of Health

Grant: U01HG013227

National Institutes of Health

Grant: R35GM137878

National Institutes of Health

Grant: R01HL151522

National Institutes of Health

Grant: 5R01AG078964-04

Identification and Characterization of Cell-Specific Transposable Elements Implicated on Alzheimer Disease and Healthy Aging

National Institutes of Health

Grant: 5R01HG007175-02

DECODING THE IMPACT OF TRANSPOSABLE ELEMENTS ON GENE REGULATION

National Institutes of Health

Grant: 5R35GM137878-04

Molecular and Genetic Analysis of Fin Regeneration in Zebrafish

National Institutes of Health

Grant: 5U24NS132103-02

WashU Somatic Mosaicism across Human Tissues (SMaHT) Program Organizational Center

National Institutes of Health

Grant: 5R01AG083568-03

Endogenous retrovirus in joint aging and osteoarthritis development

National Institutes of Health

Grant: 5R01HL151522-03

Dissecting injury-responsive gene expression during zebrafish heart regeneration

National Institutes of Health

Grant: 5U01HG013227-02

Washington University Omics Production Center

Stem Cell and Regenerative Medicine Center

Children's Discovery Institute of Washington University

University of Wisconsin Institute for Clinical and Translational Research

hybridLicense: other-oa

journalhttps://genome.cshlp.org/content/early/2025/01/03/gr.279372.124.full.pdf

publisherhttps://genome.cshlp.org/content/early/2025/01/03/gr.279372.124.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.279372.124

journalhttps://doi.org/10.1101/gr.279372.124

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39809530

Fields of Study

Single-cell and spatial transcriptomicsCongenital heart defects researchExtracellular vesicles in disease0301 basic medicine03 medical and health sciences

MeSH Terms

AnimalsChromatinRegenerationZebrafishGene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimal FinsSingle-Cell AnalysisTranscriptome

Keywords

BiologyZebrafishRegeneration (biology)ReprogrammingGene regulatory networkChromatinEnhancerTranscriptomeCell typeEpigeneticsCell biologyCellular differentiationGeneticsRegulation of gene expressionComputational biologyGeneCellGene expression570ICTS (Institute of Clinical and Translational Sciences)590Gene Expression Regulation, DevelopmentalResourcesMedicine and Health SciencesAnimal FinsAnimalsRegenerationGene Regulatory NetworksSingle-Cell Analysis

Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (11)

Funding (17 grants)

Open Access

Topics

Annotations (Europe PMC)