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The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data

Genome Research(2025)10.1101/gr.280480.125Source: DataRank Database

The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data is a research paper published in Genome Research (2025). On theSindex it has a DataRank of 0. It has been cited 3 times.

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Enrichment:Funding (9 grants)OA: bronzeTopics (38)IDs (PubMed, PMC, OpenAlex)Annotations (1)

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Authors (3)

Isaiah D. Kaufman ORCID,Polly Yingshan Hsu ORCID,Hsin-Yen Larry Wu ORCID

Live enrichment

PubMed:40695595 PMC:PMC12401059 OpenAlex:https://openalex.org/W4412566550

National Institute of General Medical Sciences

Grant: T32-GM110523

National Institutes of Health

Grant: R35GM155375

National Science Foundation

Grant: 2425390

TRTech-PGR: Systematic identification and characterization of noncanonical ORFs in four model species

NIGMS NIH HHS

Grant: T32 GM110523

NIGMS NIH HHS

Grant: T32 GM152798

National Science Foundation

Grant: 2051885

Translational regulation and novel translated small ORFs in Arabidopsis ABA responses

National Institutes of Health

Grant: 1T32GM110523-01

Plant Biotechnology for Health and Sustainability

National Institutes of Health

Grant: 5R35GM155375-02

Regulation of upstream open reading frames in mRNA stability and translation

National Institute of General Medical Sciences

bronzeLicense: CC BY NC

journalhttp://genome.cshlp.org/content/early/2025/07/22/gr.280480.125.full.pdf

publisherhttp://genome.cshlp.org/content/early/2025/07/22/gr.280480.125.full.pdf

publisherhttps://syndication.highwire.org/content/doi/10.1101/gr.280480.125

journalhttps://doi.org/10.1101/gr.280480.125

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40695595

Fields of Study

RNA and protein synthesis mechanismsGenomics and Phylogenetic StudiesRNA modifications and cancer0206 medical engineering02 engineering and technologyOpen Reading FramesProtein BiosynthesisSoftwareTranscriptomeArabidopsisHumansGenomicsOryza

MeSH Terms

HumansOryzaSoftwareProtein BiosynthesisOpen Reading FramesArabidopsisGenomicsTranscriptome

Keywords

ORFSBiologyComputational biologyGeneOpen reading frameRNA-SeqGeneticsTranscriptomeGene expressionResourceOpen Reading FramesProtein BiosynthesisArabidopsisHumansOryzaGenomicsSoftware

The ggRibo single-gene viewer reveals insights into translatome and other nucleotide-resolution omics data

FAIR Checklist

Authors (3)

Funding (9 grants)

Open Access

Topics

Annotations (Europe PMC)