Complete sequences of six major histocompatibility complex haplotypes, including all the major MHC class II structures is a dataset published in HLA (2023). On theSindex it has a DataRank of 0.888, placing it in the top 22.8% of the data-sharing corpus. It has been cited 30 times, with 22 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 23% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Whole-genome Nanopore, Illumina and PacBio HiFi sequencing data generated as part of this study and the generated MHC assemblies were submitted to NCBI BioProject PRJNA764575.”
The paper provides a BioProject accession (PRJNA764575), which is a persistent identifier scheme accepted at 'yes'. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Whole-genome Nanopore, Illumina and PacBio HiFi sequencing data generated as part of this study and the generated MHC assemblies were submitted to NCBI BioProject PRJNA764575.”
NCBI BioProject is a named data repository. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Whole-genome Nanopore, Illumina and PacBio HiFi sequencing data generated as part of this study and the generated MHC assemblies were submitted to NCBI BioProject PRJNA764575.”
The dataset identifier (BioProject PRJNA764575) appears only in the body text (data availability statement), not in the reference list. [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
The Data Availability Statement points to a repository record with an accession (NCBI BioProject PRJNA764575). [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“TABLE 2 Sequenced cell lines and assembled haplotypes—summary of sequencing and assembly statistics”
The paper includes a table that itemizes the assemblies with their lengths and GenBank IDs, providing a structured description of the dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Whole-genome Nanopore, Illumina and PacBio HiFi sequencing data generated as part of this study and the generated MHC assemblies were submitted to NCBI BioProject PRJNA764575.”
The data availability statement provides a route to the data with no stated precondition. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The whole-genome sequencing data were filtered to contain only reads mapping to the assembled MHC sequences prior to submission.”
The paper describes the action of submitting data to NCBI BioProject, which implies open access but does not use a standard access-level label. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from cell lines and are deposited in a public repository; no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state any retention period or availability timing for the data.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper uses IPD-IMGT/HLA, a community standard for HLA allele nomenclature, to compare the assemblies. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
The paper mentions BioSample IDs for data from another study (reference 9) in Table S2, providing identifiers for external resources. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not attach any license to the data; the CC-BY license applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
The paper gives GenBank accessions but no version token or date to identify a specific snapshot of the data. [majority verdict 'no' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The Python source code used for annotation of the assembled MHC sequences is available via PyPI ( https://pypi.org/project/MHC-Annotation/ ).”
A machine-resolvable locator (PyPI package) is given for the study's own code. [majority verdict 'yes' (3/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“U01 AI090905”
An award number (NIH-NIAID U01 AI090905) is attached to a named funder. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“sequenced using a HiSeq3000 system (Illumina Inc)”
The paper names specific instruments and software used to produce the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The annotations are included in the GenBank submissions of the sequences.”
The annotations are included in the GenBank submissions, serving as a documentation object that travels with the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.515
From this paper's citation signal
Citation Network Contribution
0.373
From 16 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 22 citers.
Bundesministerium für Bildung und Forschung
Grant: 031L0184B
Deutsche Forschungsgemeinschaft
Grant: 428994620
National Institutes of Health
Grant: NIH‐NIAID U01 AI090905
NIAID NIH HHS
Grant: U01 AI090905
National Institutes of Health
Grant: 1U01AI090905-01
Insights into immune-related disease born from population genomics
Deutsche Forschungsgemeinschaft
Grant: unidentified
unidentified
Jürgen Manchot Stiftung
FWCI
2.67
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords