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Machine learning-assisted mid-infrared spectrochemical fibrillar collagen imaging in clinical tissues

Journal of Biomedical Optics(2024)10.1117/1.jbo.29.9.093511Source: DataRank Database

Machine learning-assisted mid-infrared spectrochemical fibrillar collagen imaging in clinical tissues is a research paper published in Journal of Biomedical Optics (2024). On theSindex it has a DataRank of 0.386. It has been cited 8 times, with 5 citing works in its 1-hop citation network.

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0.386DataRank · unranked

Scored on demand from live citation data

Open Access8 citations · 5 citing works in its network

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Linked data & code

doi

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (15 grants)Impact (FWCI 3.66)OA: goldTopics (48)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 85%Citation Network 15%

Base Score Contribution

0.330

From this paper's citation signal

Citation Network Contribution

0.0563

From 3 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 5 citers.

Special Section Guest Editorial: JBO Special Section on Hyperspectral Imaging
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Advanced Science20251 citations43 referencesContributes 0.016
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Biophysical Reviews20256 citations167 referencesContributes 0.012
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Discover Oncology20250 citations25 referencesContributes 0.000
Detection of collagen band–associated regions in H&E-stained colonic biopsies of collagenous colitis patients using superpixel-based feature extraction and neural network classification
Diagnostic Pathology20260 citations34 referencesContributes 0.000

Authors (6)

Bryan E. Rubio Perez,Yuming Liu ORCID,Sydney Runkle,Kevin W. Eliceiri ORCID,Filiz Yesilköy ORCID

Live enrichment

PubMed:39364328 PMC:PMC11448345 OpenAlex:https://openalex.org/W4402926825

NCI NIH HHS

Grant: P30 CA014520

NIBIB NIH HHS

Grant: R21 EB034411

NCI NIH HHS

Grant: R61 CA281795

NCI NIH HHS

Grant: U54 CA268069

NIGMS NIH HHS

Grant: P41 GM135019

NIBIB NIH HHS

Grant: P41 EB031772

NCI NIH HHS

Grant: R01 CA238191

NIH HHS

Grant: S10 OD023526

National Institutes of Health

Grant: 5P30CA014520-18

CANCER CENTER SUPPORT

National Institutes of Health

Grant: 1U54CA268069-01

Center for Multiparametric Imaging of Tumor Immune Microenvironments

National Institutes of Health

Grant: 1P41GM135019-01

Center for Open Bioimage Analysis

National Institutes of Health

Grant: 3R01CA238191-02S1

Quantitative histopathology for cancer prognosis using quantitative phase imaging on stained tissues

National Institutes of Health

Grant: 5R21EB034411-02

Metasurface enhanced and machine learning aided spectrochemical liquid biopsy

National Institutes of Health

Grant: 1R61CA281795-01

A novel multimodal ECM analysis platform for tumor characterization combining morphological and spectrochemical tissue imaging approaches.

National Institutes of Health

Grant: 1S10OD023526-01A1

Automated Tissue Microarrayer

FWCI

3.66

Citation Percentile

0.9%

Citation Trend

2024

2025

2026

goldLicense: cc-by

journalhttps://doi.org/10.1117/1.jbo.29.9.093511

publisherhttps://doi.org/10.1117/1.jbo.29.9.093511

repositoryhttps://pubmed.ncbi.nlm.nih.gov/39364328

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/11448345

repositoryhttps://pmc.ncbi.nlm.nih.gov/articles/PMC11448345/pdf/JBO-029-093511.pdf

Fields of Study

Spectroscopy Techniques in Biomedical and Chemical ResearchOptical Imaging and Spectroscopy TechniquesCollagen: Extraction and CharacterizationHumansMachine LearningFibrillar CollagensSpectrophotometry, InfraredPancreasImage Processing, Computer-AssistedSecond Harmonic Generation MicroscopyPancreatic NeoplasmsMultimodal ImagingHyperspectral Imaging

MeSH Terms

Machine LearningSecond Harmonic Generation MicroscopyHyperspectral ImagingHumansImage Processing, Computer-AssistedPancreasPancreatic NeoplasmsSpectrophotometry, InfraredFibrillar CollagensMultimodal Imaging

Keywords

InfraredMaterials scienceBiomedical engineeringOpticsNanotechnologyPathologyMedicinePhysicsCancersecond harmonic generationTumor MicroenvironmentMachine LearningMid-infrared Spectral ImagingFibrillar Collagen ImagingPancreatic NeoplasmsSpectrophotometry, InfraredFibrillar CollagensSecond Harmonic Generation MicroscopyImage Processing, Computer-AssistedHumansHyperspectral ImagingSpecial Section on Hyperspectral Imaging, Part 1PancreasMultimodal ImagingArticle

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N/A

1.9DataRank · unranked

Science Advances(2020)

co-cited

10.1126/sciadv.aay9919

Machine learning-assisted mid-infrared spectrochemical fibrillar collagen imaging in clinical tissues

FAIR Checklist

DataRank Breakdown

Top 5 citers driving the network score

Authors (6)

Funding (15 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)

Related Papers (1)