A single-cell analysis of the molecular lineage of chordate embryogenesis is a dataset published in Science Advances (2020). On theSindex it has a DataRank of 0.924, placing it in the top 21.9% of the data-sharing corpus. It has been cited 38 times, with 25 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 22% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The raw data and gene counts table are available from GEO under accession number ( GSE113788 ).”
GSE113788 is a persistent identifier in the GEO scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The raw data and gene counts table are available from GEO under accession number ( GSE113788 ).”
GEO is a named repository for the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The raw data and gene counts table are available from GEO under accession number ( GSE113788 ).”
The dataset identifier appears only in the body text, not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The raw data and gene counts table are available from GEO under accession number ( GSE113788 ).”
The data-availability statement points to a repository record (GEO with accession).
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“we obtained a total of 750 single-cell expression profiles that correspond to 47 cell types for the wild type and 10 cell types for mitogen-activated protein kinase (MAPK) kinase (MEK) inhibitor–treated embryos.”
The dataset is described in running prose (size and number of cell types) but not as an itemised inventory.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The raw data and gene counts table are available from GEO under accession number ( GSE113788 ).”
The data are deposited in a public repository (GEO) with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw data and gene counts table are available from GEO under accession number ( GSE113788 ).”
The paper describes where the data are available (GEO) but does not explicitly label the access level as 'open access' or similar; it implies availability through an action.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from Ciona embryos, not human subjects, so no sensitive data gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No statement about how long the data will be retained or when they become available beyond the current availability. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, BIDS) is named for the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for any external resource (e.g., another accession, RRID, assembly ID) is provided in the text. [majority verdict 'no' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is stated for the data; the article licence (CC BY-NC) is not attached to the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code location is provided; only third-party tools are mentioned.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Z.B. is partially supported by an NIH grant (R01GM097576)”
An award number is given for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“We generated single-cell transcriptome using a modified Smart2 protocol”
The paper names specific protocols and instruments used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“We generated the average expression profile for each cell cluster (table S2)”— not found in the paper; verdict downgraded
Variable definitions exist inside the article (Supplementary Table S2) but no documentation object is stated to accompany the deposit. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.550
From this paper's citation signal
Citation Network Contribution
0.375
From 19 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 25 citers.
National Institutes of Health
Grant: R01GM097576, P30CA008748
National Institutes of Health
Grant: R01GM124061
Japan Society for the Promotion of Science
Grant: 18H02376
Japan Society for the Promotion of Science
Grant: 17KT0020
National Natural Science Foundation of China
Grant: 41676119, 41476120
National Key Research and Development Program of China.
Grant: 2018YFD0900604
University Development Fund of CUHK-Shenzhen
Grant: UDF01001585
Fundamental Research Funds for the Central Universities from the Ocean University of China
Grant: 201822016
NIGMS NIH HHS
Grant: R01 GM097576
NCI NIH HHS
Grant: P30 CA008748
FWCI
2.12
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals
Additional file 1 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 1 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 3 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 3 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 4 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 4 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 5 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 5 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 6 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 6 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 7 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 7 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 8 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 8 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 9 of Single-cell analysis of cell fate bifurcation in the chordate Ciona
Additional file 9 of Single-cell analysis of cell fate bifurcation in the chordate Ciona