A telencephalon cell type atlas for goldfish reveals diversity in the evolution of spatial structure and cell types is a dataset published in Science Advances (2023). On theSindex it has a DataRank of 0.904, placing it in the top 22.3% of the data-sharing corpus. It has been cited 30 times, with 27 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 22% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All code, the final single-cell expression dataset, and ST dataset, with annotations and metadata, as well as high-resolved cell types mapping (fig. S5), are available from Dryad, DOI: 10.5061/dryad.qfttdz0p9.”— not found in the paper; verdict downgraded
The paper provides a DOI for the dataset, which is a persistent identifier scheme. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Dryad”
The paper names Dryad (a curated repository listed in re3data) as the holder of the data [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“DOI: 10.5061/dryad.qfttdz0p9”
The dataset's identifier appears only in the body text (Data and materials availability), not in the reference list [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The sequencing data generated in the current study have been deposited in the GEO database at NCBI (accession no. PRJNA1018874). All code, the final single-cell expression dataset, and ST dataset, with annotations and metadata, as well as high-resolved cell types mapping (fig. S5), are available from Dryad, DOI: 10.5061/dryad.qfttdz0p9.”— not found in the paper; verdict downgraded
The statement points to a repository record with accessions and a DOI. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“we divided the ~40,000 cells into three main classes: glutamatergic neurons (~23,400 cells), γ-aminobutyric acid (GABA)–releasing (GABAergic) neurons (~8300 cells), and nonneuronal cells (~8500 cells)”
The dataset's content is described in running prose, not in an itemised inventory. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The sequencing data generated in the current study have been deposited in the GEO database at NCBI (accession no. PRJNA1018874).”
The data are deposited in public repositories (GEO, Dryad) with no stated precondition or restriction [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The sequencing data generated in the current study have been deposited in the GEO database at NCBI (accession no. PRJNA1018874).”
The paper describes where the data can be obtained (deposited in GEO and available from Dryad) but does not explicitly label the access level (e.g., 'open access') [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The study does not involve sensitive or human-subject data, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“All code, the final single-cell expression dataset, and ST dataset, with annotations and metadata, as well as high-resolved cell types mapping (fig. S5), are available from Dryad, DOI: 10.5061/dryad.qfttdz0p9.”— not found in the paper; verdict downgraded
The paper states that the data are available now but does not indicate how long they will persist. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource (other than the paper's own dataset) is given. [majority verdict 'no' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license artefact is attached to the dataset itself.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the dataset.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“All custom code is also available from GitHub ( https://github.com/muhammadtibi/Goldfish_Telencephalon_scRNAseq )”
The paper provides a machine-resolvable code-forge URL for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“A.Z. is supported by the European Research Council (TYPEWIRE-852786)”
The paper includes an alphanumeric grant number from a named funder. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“scRNA-seq data were aligned to the goldfish reference genome and transcriptome (NCBI Assembly ASM336829v1), and the mRNA molecules were counted using the 10x Genomics Cell Ranger (version 5.0.1)”
The text names specific software and version used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object is named as travelling with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.515
From this paper's citation signal
Citation Network Contribution
0.389
From 17 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 27 citers.
European Research Council
Grant: 852786
Reconstructing wiring rules of in vivo neural networks using simultaneous single-cell connectomics and transcriptomics
NIGMS NIH HHS
Grant: P20 GM113109
Wellcome Trust
Grant: unidentified
unidentified
European Commission
Grant: 789054
Myelin at the crossroads of Development and Disease
National Institutes of Health
Grant: 5R35NS097305-02
Development and Expansion of the Human Cerebral Cortex
National Institutes of Health
Grant: 3R35NS097305-06S1
Development and Expansion of the Human Cerebral Cortex
National Institutes of Health
Grant: 5U41HG002371-21
The UCSC Genome Browser
National Institutes of Health
Grant: 2P20GM113109-06
Cognitive and Neurobiological Approaches to Plasticity (CNAP) Center Phase 2
National Institutes of Health
Grant: 5U41HG002371-15
The UCSC Genome Browser
National Institutes of Health
Grant: 5R01NS040511-10
Oligodendrocyte Lineage Gene Function in the CNS
National Institutes of Health
Grant: 5F32NS103266-02
Using Single-Cell RNA Sequencing to Characterize Regional Differences in Cortical Development
FWCI
2.82
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals
Functional and Evolutionary Analysis of St18, Encoding a Zinc Finger Transcription Factor, in Oligodendrocyte Differentiation and Myelination
A telencephalon cell type atlas for goldfish reveals diversity in the evolution of spatial structure and cell types