Near-Complete Genome Sequence of Lötschberg Virus ( Mononegavirales : Filoviridae ) Identified in European Perch (Perca fluviatilis Linnaeus, 1758) is a dataset published in Microbiology Resource Announcements (2023). On theSindex it has a DataRank of 0.330, placing it in the top 52.1% of the data-sharing corpus. It has been cited 6 times, with 5 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 52% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The genome sequence of LTBV is available at GenBank under accession no. OQ186623”
The paper gives a GenBank accession (OQ186623), which is a persistent identifier in a recognized scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“HTS raw data have been deposited in the NCBI Sequence Read Archive (SRA)”
The paper names a curated repository (NCBI Sequence Read Archive) as the holder of the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Data availability. HTS raw data have been deposited in the NCBI Sequence Read Archive (SRA) under accession no. SRR12586223 ( https://www.ncbi.nlm.nih.gov/sra/?term=SRR12586223 ). The genome sequence of LTBV is available at GenBank under accession no. OQ186623 ( https://www.ncbi.nlm.nih.gov/nuccore/?term=OQ186623 ).”
The dataset identifiers appear in the body text (data availability statement) but not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. HTS raw data have been deposited in the NCBI Sequence Read Archive (SRA) under accession no. SRR12586223 ( https://www.ncbi.nlm.nih.gov/sra/?term=SRR12586223 ). The genome sequence of LTBV is available at GenBank under accession no. OQ186623 ( https://www.ncbi.nlm.nih.gov/nuccore/?term=OQ186623 ).”
The statement points to archived data in public repositories with accessions (Colavizza category 3).
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“TABLE 1 Comparison of the reported genomic sequence lengths and the length of the open reading frames (ORFs) of Lötschberg virus with those of related fish filovirids”
The paper includes a table itemizing the genome length and ORF sizes, which is an itemised inventory of the dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“HTS raw data have been deposited in the NCBI Sequence Read Archive (SRA) under accession no. SRR12586223 ( https://www.ncbi.nlm.nih.gov/sra/?term=SRR12586223 ). The genome sequence of LTBV is available at GenBank under accession no. OQ186623 ( https://www.ncbi.nlm.nih.gov/nuccore/?term=OQ186623 ).”
The text gives a route to the data in public repositories with no stated precondition such as embargo, registration, or application.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“HTS raw data have been deposited in the NCBI Sequence Read Archive (SRA) under accession no. SRR12586223 ( https://www.ncbi.nlm.nih.gov/sra/?term=SRR12586223 ). The genome sequence of LTBV is available at GenBank under accession no. OQ186623 ( https://www.ncbi.nlm.nih.gov/nuccore/?term=OQ186623 ).”
The paper describes the access action (URLs and accession numbers) but does not explicitly label the access level using a standard vocabulary term.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from fish samples and are not human subject data; no gatekeeper is mentioned, and the data are openly accessible.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state when the data become available or how long they persist, nor does it commit to a retention period. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format (e.g., FASTQ, FASTA) for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MIxS, BIDS) is named; the paper uses only generic terms and standard bioinformatics tools.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GENO_Pfluv_1.0”
The paper provides an identifier (GENO_Pfluv_1.0) for the European perch genome assembly used in the analysis.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper only states the article is under CC BY 4.0; no licence is stated for the deposited data themselves.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token (e.g., v1, release number) or date is given to pin a specific snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper does not mention any code written for this study or provide a locator for it.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“grant no. MON-108 to T.S.”
Specific award/grant numbers are given for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“HiSeq 3000 system (Illumina)”
The paper names specific instruments, kits, and software versions used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“TABLE 1 Comparison of the reported genomic sequence lengths and the length of the open reading frames (ORFs) of Lötschberg virus with those of related fish filovirids”
Variable-level definitions (ORF lengths) are given in a table inside the article, but no documentation object is stated to accompany the data deposit.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.292
From this paper's citation signal
Citation Network Contribution
0.0384
From 3 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 5 citers.
Bundesamt für Lebensmittelsicherheit und Veterinärwesen
Grant: MON-108
Innosuisse - Schweizerische Agentur für Innovationsförderung
Grant: 25178.1 PFLS-LS
NIAID NIH HHS
Grant: HHSN272201800013C