Complete Genome Sequence of Soil Bacterium Burkholderia sp. Strain FERM BP-3421, a Producer of Spliceostatins is a dataset published in Microbiology Resource Announcements (2023). On theSindex it has a DataRank of 0.292, placing it in the top 56.1% of the data-sharing corpus. It has been cited 6 times, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 33/100.
Ranks in the top 56% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The raw sequence reads have been submitted to the SRA under accession numbers SRX18227412 (Nanopore) and SRX18227411 (Illumina), BioSample accession number SAMN31673526, and BioProject accession number PRJNA899914. The assembled genome sequence of Burkholderia sp. FERM BP-3421 has been deposited at GenBank under accession numbers CP117779, CP117780, CP117781, and CP117782, which are the versions described in this paper.”— not found in the paper; verdict downgraded
The paper provides persistent identifiers (SRA, BioSample, BioProject, GenBank accessions) for the dataset. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The raw sequence reads have been submitted to the SRA under accession numbers SRX18227412 (Nanopore) and SRX18227411 (Illumina), BioSample accession number SAMN31673526, and BioProject accession number PRJNA899914. The assembled genome sequence of Burkholderia sp. FERM BP-3421 has been deposited at GenBank under accession numbers CP117779, CP117780, CP117781, and CP117782, which are the versions described in this paper.”— not found in the paper; verdict downgraded
The paper names SRA and GenBank, which are proper data repositories. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The raw sequence reads have been submitted to the SRA under accession numbers SRX18227412 (Nanopore) and SRX18227411 (Illumina), BioSample accession number SAMN31673526, and BioProject accession number PRJNA899914. The assembled genome sequence of Burkholderia sp. FERM BP-3421 has been deposited at GenBank under accession numbers CP117779, CP117780, CP117781, and CP117782, which are the versions described in this paper.”— not found in the paper; verdict downgraded
The dataset identifiers appear only in the body text (data availability statement) and not in the reference list. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The raw sequence reads have been submitted to the SRA under accession numbers SRX18227412 (Nanopore) and SRX18227411 (Illumina), BioSample accession number SAMN31673526, and BioProject accession number PRJNA899914. The assembled genome sequence of Burkholderia sp. FERM BP-3421 has been deposited at GenBank under accession numbers CP117779, CP117780, CP117781, and CP117782, which are the versions described in this paper.”— not found in the paper; verdict downgraded
The data availability statement points to repositories with accession numbers, which is a category 3 link to archived data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The genome is composed of four circular replicons of 3.90, 3.0, 0.59, and 0.24 Mbp.”
The dataset's content is described in a running prose sentence, not in an itemised inventory. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The raw sequence reads have been submitted to the SRA under accession numbers SRX18227412 (Nanopore) and SRX18227411 (Illumina), BioSample accession number SAMN31673526, and BioProject accession number PRJNA899914. The assembled genome sequence of Burkholderia sp. FERM BP-3421 has been deposited at GenBank under accession numbers CP117779, CP117780, CP117781, and CP117782, which are the versions described in this paper.”— not found in the paper; verdict downgraded
The text gives a route to the data (SRA and GenBank) with no stated precondition such as embargo or registration. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw sequence reads have been submitted to the SRA under accession numbers SRX18227412 (Nanopore) and SRX18227411 (Illumina), BioSample accession number SAMN31673526, and BioProject accession number PRJNA899914. The assembled genome sequence of Burkholderia sp. FERM BP-3421 has been deposited at GenBank under accession numbers CP117779, CP117780, CP117781, and CP117782, which are the versions described in this paper.”— not found in the paper; verdict downgraded
The paper does not label the access level with a vocabulary term but describes the action of submission to repositories, from which open access can be inferred. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The data are genome sequences of a soil bacterium, which are not sensitive or human-subject data.”— not found in the paper; verdict downgraded
The data are not sensitive or human-subject, so no gatekeeper is named, leading to a verdict of no.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“No sentence in the paper states when the data become available or how long they persist.”— not found in the paper; verdict downgraded
The paper does not mention any timing or persistence commitment for the data.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“No file format is explicitly named in the paper.”— not found in the paper; verdict downgraded
The paper does not mention any file format token for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“No community standard (e.g., MIAME, MIxS) is named in the paper.”— not found in the paper; verdict downgraded
The paper does not name any data or metadata community standard.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“accession no. KJ364655”
The paper provides an accession number (KJ364655) for a 16S rRNA sequence from a prior study, which is a qualified reference to another resource. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
“No reuse license is stated for the data.”— not found in the paper; verdict downgraded
The paper does not attach any licence to the data themselves.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“which are the versions described in this paper.”
The GenBank accession numbers serve as version tokens, and the text states they are the versions described. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“No code availability statement is present in the paper.”— not found in the paper; verdict downgraded
The paper does not provide any locator for custom code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“under grant 1R01GM129344-01A1”
The paper gives a specific grant number (1R01GM129344-01A1) from a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Sequencing was performed using a FLO-MIN104 (v. R9) flow cell and a MinION instrument.”
The paper names specific instruments and software versions used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“No documentation object (README, codebook) is mentioned as accompanying the data.”— not found in the paper; verdict downgraded
The paper does not mention any documentation object shipped with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.292
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →HHS | NIH | National Institute of General Medical Sciences
Grant: R01 GM129344
National Institutes of Health
Grant: 1R01GM129344-01A1
Development of a Bacterial Host for Natural Product Discovery and Production
FWCI
0.55
Citation Percentile
0.6%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals