Whole-genome sequencing of Chromobacterium subtsugae strains exhibiting toxicity to Drosophila melanogaster is a dataset published in Microbiology Resource Announcements (2024). On theSindex it has a DataRank of 0.165, placing it in the top 70.2% of the data-sharing corpus. It has been cited 2 times, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 70% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Chromobacterium subtsugae ATCC 31532 data are under GenBank accession CP142381 , and raw sequencing reads are under SRA accession numbers SRR27256803 (Illumina) and SRR27256802 (Nanopore).”
The paper provides persistent identifiers (GenBank and SRA accessions) for its own dataset.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Chromobacterium subtsugae ATCC 31532 data are under GenBank accession CP142381 , and raw sequencing reads are under SRA accession numbers SRR27256803 (Illumina) and SRR27256802 (Nanopore).”
The paper names GenBank and SRA as the repositories for the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Chromobacterium subtsugae ATCC 31532 data are under GenBank accession CP142381 , and raw sequencing reads are under SRA accession numbers SRR27256803 (Illumina) and SRR27256802 (Nanopore).”
The dataset identifiers appear only in the body text, not in a reference list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Chromobacterium subtsugae ATCC 31532 data are under GenBank accession CP142381 , and raw sequencing reads are under SRA accession numbers SRR27256803 (Illumina) and SRR27256802 (Nanopore). Chromobacterium subtsugae ∆vioS data are under GenBank accession CP143257 , and raw sequencing reads are under SRA accession numbers SRR27256753 (Illumina) and SRR27256752 (Nanopore).”
The data availability statement points to repository records with accession numbers. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“This resulted in 13,205,486 reads (36–151 bp) for ATCC 31532 and 21,435,796 reads (35–151 bp) for ∆vioS.”— not found in the paper; verdict downgraded
The dataset extent is described in running prose, not in an itemized inventory. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Chromobacterium subtsugae ATCC 31532 data are under GenBank accession CP142381 , and raw sequencing reads are under SRA accession numbers SRR27256803 (Illumina) and SRR27256802 (Nanopore).”
The data are deposited in public repositories (GenBank, SRA) with no stated precondition. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Chromobacterium subtsugae ATCC 31532 data are under GenBank accession CP142381 , and raw sequencing reads are under SRA accession numbers SRR27256803 (Illumina) and SRR27256802 (Nanopore).”
The paper describes where the data can be accessed (GenBank and SRA) but does not label the access level with a standard vocabulary term. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are bacterial genome sequences, not human subject or sensitive data; no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No statement about how long the data will be retained or when they become available.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is explicitly named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard (e.g., MIAME, MIxS) is named.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource (e.g., reference genome accession) is provided.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is assigned to the data; the CC-BY 4.0 license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is stated for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code availability statement is provided; only third-party tools are named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“NB was funded in part by the National Institutes of Health (R35GM128871).”
A grant number (R35GM128871) is attached to a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Sequencing was performed on the Illumina NextSeq2000 platform using a 300-cycle flow cell kit to produce 2 × 150 bp paired reads.”
The paper names specific instruments, kits, and software versions used to generate the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is mentioned, and no variable-definition table exists inside the article.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.165
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →HHS | National Institutes of Health
Grant: R35GM128871
National Institutes of Health
Grant: 5R35GM128871-02
Non-genetic inheritance: mechanisms of microbiome-mediated transgenerational change
Johns Hopkins University (JHU)
Johns Hopkins University
Johns Hopkins University (JHU)
FWCI
0.48
Citation Percentile
0.6%
Citation Trend
Fields of Study
Keywords