Draft Reference Genome Sequence of Corynebacterium mastitidis RC, an Ocular Commensal, Isolated from Mouse Conjunctiva is a dataset published in Microbiology Resource Announcements (2022). On theSindex it has a DataRank of 0.208, placing it in the top 64.8% of the data-sharing corpus. It has been cited 3 times, with 2 citing works in its 1-hop citation network. Its calibrated FAIR score is 46/100.
Ranks in the top 65% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The raw sequencing data are deposited and available at NCBI SRA under the accession number SRR15665287.”— not found in the paper; verdict downgraded
The paper provides multiple repository accessions (SRA, BioProject, BioSample, GenBank) which are persistent identifiers in PID schemes. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The raw sequencing data are deposited and available at NCBI SRA”
The paper names NCBI SRA, a repository listed in re3data, as the holder of the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The raw sequencing data are deposited and available at NCBI SRA under the accession number SRR15665287.”— not found in the paper; verdict downgraded
The dataset identifiers appear in the body text (Data Availability section) but not as a reference-list entry. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The raw sequencing data are deposited and available at NCBI SRA under the accession number SRR15665287 . The complete project information is available under the NCBI BioProject identifier (ID) PRJNA758739 . The sample information is available under the NCBI BioSample ID SAMN21033600 . The annotated genome sequence is deposited in NCBI under the accession JAKRKB000000000 . The code and the workflow documentation describing the genome assembly are deposited and available at the github repository online at https://github.com/NIH-NEI/cmast-genome-assembly . The permanently linked code release is also published in Zenodo, online at https://doi.org/10.5281/zenodo.6282054 .”
The data availability statement points to a repository record (NCBI SRA) with an accession number, which is Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The assembled C. mastitidis RC genome is 2,153,054 bp long, with 42 contigs at the N 50 of 130,636 bp and NG50 of 130,636 bp, 80× coverage, and the GC content of 69.06%”
The dataset's content and extent are described in running prose without an itemised inventory such as a section heading or table. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The raw sequencing data are deposited and available at NCBI SRA under the accession number SRR15665287.”— not found in the paper; verdict downgraded
The paper gives a direct route to the data in a public repository without any stated precondition. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw sequencing data are deposited and available at NCBI SRA under the accession number SRR15665287.”— not found in the paper; verdict downgraded
The paper describes the action of depositing data in NCBI SRA but does not apply an explicit access-level label such as 'open access' or 'publicly available'. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a bacterial genome sequence and are not sensitive or human-subject data, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“The raw sequencing data are deposited and available at NCBI SRA under the accession number SRR15665287.”— not found in the paper; verdict downgraded
The paper states that the data are available now but does not specify how long they will persist. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token (e.g., FASTA, FASTQ) is explicitly named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., minimum information checklist, ontology) is named; only tools and pipelines are mentioned. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource (e.g., another dataset, reference genome) is provided; only literature references with DOIs are cited.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not name any standard reuse licence for the data; only a copyright statement is present.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided to pin the snapshot of the data; only accession numbers are given. [majority verdict 'no' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“The complete code, with parameters and custom scripts used for each of the analysis components of the workflow, is provided at the GitHub repository online at https://github.com/NIH-NEI/cmast-genome-assembly .”
The paper gives a machine-resolvable locator (GitHub URL and Zenodo DOI) for the study's own code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“project number EY000184 and R01 EY032482”
The paper provides specific award numbers attached to named funders (NIH, National Eye Institute).
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“DNA was extracted using the bacterial DNA prep kit (Zymo Research, Irvine, CA) as per the manufacturer’s instructions.”
The paper names specific instruments, kits, and software versions (e.g., Zymo kit, Illumina MiSeq, FastQC v0.11.9) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is mentioned as accompanying the data; the data description is within the article.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.208
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →HHS | NIH | National Eye Institute
Grant: EY000184
HHS | NIH | National Eye Institute
Grant: EY032482
NEI NIH HHS
Grant: R01 EY032482
NEI NIH HHS
Grant: P30 EY008098
Intramural NIH HHS
Grant: Z01 EY000184
National Institutes of Health
Grant: 5R01EY032482-05
Understanding the microbial requirements for colonization and immunogenicity of commensal bacteria at the ocular surface
National Institutes of Health
Grant: 1Z01EY000184-18
CELLULAR AND MOLECULAR MECHANISMS IN UVEITIS
FWCI
0.24
Citation Percentile
0.5%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals