Draft Genome Sequences of Two Strains of Bifidobacterium dentium Isolated from a Crude Fecal Extract Used for Fecal Microbiota Transplantation in the Republic of Korea is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0, placing it in the top 100% of the data-sharing corpus. Its calibrated FAIR score is 46/100.
Ranks in the top 100% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Draft genome sequences for B. dentium FMTc1 and B. dentium FMTc3 are available in GenBank under accession numbers ERS4331523 and ERS4331524, respectively. The accession numbers for the genome assemblies are JAAWWM000000000 (for B. dentium FMTc1) and JAAWWN000000000 (for B. dentium FMTc3), under BioProject numbers PRJNA622788 and PRJNA622792.”— not found in the paper; verdict downgraded
The paper provides BioProject accession numbers (PRJNA622788 and PRJNA622792) which are globally unique persistent identifiers. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Draft genome sequences for B. dentium FMTc1 and B. dentium FMTc3 are available in GenBank under accession numbers ERS4331523 and ERS4331524 , respectively.”
GenBank is named as the repository holding the data. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Draft genome sequences for B. dentium FMTc1 and B. dentium FMTc3 are available in GenBank under accession numbers ERS4331523 and ERS4331524, respectively.”— not found in the paper; verdict downgraded
The dataset identifiers appear only in the body text (data availability statement and Table 1), not in the reference list. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Draft genome sequences for B. dentium FMTc1 and B. dentium FMTc3 are available in GenBank under accession numbers ERS4331523 and ERS4331524, respectively. The accession numbers for the genome assemblies are JAAWWM000000000 (for B. dentium FMTc1) and JAAWWN000000000 (for B. dentium FMTc3), under BioProject numbers PRJNA622788 and PRJNA622792.”— not found in the paper; verdict downgraded
The Data Availability statement points to a repository record (GenBank) with accession numbers, corresponding to Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“TABLE 1 Genome assembly statistics and strain information”
The paper contains an itemised table (Table 1) that lists the genomic characteristics of each strain, serving as a structured inventory of the dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Draft genome sequences for B. dentium FMTc1 and B. dentium FMTc3 are available in GenBank under accession numbers ERS4331523 and ERS4331524 , respectively. The accession numbers for the genome assemblies are JAAWWM000000000 (for B. dentium FMTc1) and JAAWWN000000000 (for B. dentium FMTc3), under BioProject numbers PRJNA622788 and PRJNA622792 .”
The text gives a route to the data (GenBank) with no stated precondition such as embargo, registration, or application. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Draft genome sequences for B. dentium FMTc1 and B. dentium FMTc3 are available in GenBank under accession numbers ERS4331523 and ERS4331524 , respectively. The accession numbers for the genome assemblies are JAAWWM000000000 (for B. dentium FMTc1) and JAAWWN000000000 (for B. dentium FMTc3), under BioProject numbers PRJNA622788 and PRJNA622792 .”
The paper describes where the data can be accessed (GenBank) but does not apply an explicit access-level label such as 'open access' to the data themselves. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are bacterial genome sequences, not human-subject or sensitive data, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state when the data become available or how long they persist; only that they 'are available'.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIANE, MIxS) is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“ClinicalTrials registration number NCT03399188”
The paper provides an identifier (NCT03399188) for a clinical trial that this study's data are associated with, a resource external to the own dataset. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper states the article is under CC BY 4.0, but does not mention any licence for the data themselves.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the deposited data; the accession numbers alone do not indicate a specific snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper does not mention availability of any code written by the authors.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“grant 2018M3A9H3025030”
The paper includes a specific grant number (2018M3A9H3025030) from the National Research Foundation, along with other award numbers. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Ion S5 next-generation sequencing system”
The paper names the specific sequencing platform (Ion S5) and other tools (e.g., SPAdes v3.9.0) used to generate the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“TABLE 1 Genome assembly statistics and strain information”
Variable definitions are provided inside the article in Table 1, but no separate documentation object (e.g., README, codebook) is said to accompany the data. [majority verdict 'partial' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
HHS | National Institutes of Health
Grant: R21CA236690
National Research Foundation of Korea
Grant: 2018M3A9H3025030
Cancer Research Institute
Grant: UTA18-000889
Leona M. and Harry B. Helmsley Charitable Trust
Grant: 1912-03604
National Institutes of Health
Grant: 5R21CA236690-03
A personalized colorectal cancer-on-a-chip for assessing tumor-microbiome crosstalk
FWCI
0.00
Citation Percentile
0.0%
Fields of Study
Keywords
Sustainable Development Goals