Complete Genome Sequence of Vibrio coralliilyticus OCN008 is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0.338, placing it in the top 51.5% of the data-sharing corpus. It has been cited 7 times, with 4 citing works in its 1-hop citation network. Its calibrated FAIR score is 71/100.
Ranks in the top 52% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The complete genome sequence was deposited in GenBank under the accession numbers CP048693 , CP048694 , and CP048695 .”
The paper provides GenBank accession numbers (CP048693 etc.), which are persistent identifiers in the PID scheme for GenBank. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The complete genome sequence was deposited in GenBank under the accession numbers CP048693 , CP048694 , and CP048695 .”
GenBank is a named data repository that issues accessions. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The complete genome sequence was deposited in GenBank under the accession numbers CP048693 , CP048694 , and CP048695 .”
The dataset identifiers appear only in the body text of the Data Availability section, not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The complete genome sequence was deposited in GenBank under the accession numbers CP048693 , CP048694 , and CP048695 . Versions CP048693.1 , CP048694.1 , and CP048695.1 are described in this paper. The raw reads are available under BioProject number PRJNA605822 and Sequence Read Archive (SRA) Run Selector study accession number SRP262515 .”
The data availability statement points to repository records with accessions, which is Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The resulting genome assembly consists of two chromosomes and one megaplasmid. The assembly is full length with 3 contigs and a total size of 5.63 Mb (chromosome I [Chr I], 3.48 Mb; Chr II, 1.91 Mb; plasmid, 244.69 kb).”
The dataset's content and size are described in running prose, not in an itemised inventory (section, table, or list).
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The complete genome sequence was deposited in GenBank under the accession numbers CP048693 , CP048694 , and CP048695 .”
The paper gives a route to the data (GenBank) with no stated precondition; the data are publicly available. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The complete genome sequence was deposited in GenBank under the accession numbers CP048693 , CP048694 , and CP048695.”— not found in the paper; verdict downgraded
The paper describes the deposit action but does not apply an explicit access-level label such as 'open access' or 'restricted access' to the data itself. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a bacterial genome sequence, not human or sensitive, so no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will be available or make any persistence commitment. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token is named for the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name a community data or metadata standard (e.g., MIAME, MINSEQE, GO); it uses standard bioinformatics tools but does not label a standard. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“A draft genome sequence of 210 contigs was published and is available in GenBank (accession number AVOO00000000.1).”— not found in the paper; verdict downgraded
The paper gives an identifier (AVOO00000000.1) for a third-party resource (the previous draft genome) that the study builds upon. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper only states the article's CC-BY license, not a reuse license for the data itself.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“Versions CP048693.1 , CP048694.1 , and CP048695.1 are described in this paper.”
A version token ('.1') is provided for each accession.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“custom scripts are available on Github at https://github.com/Juliacvk/OCN008_ASM”
A machine-resolvable code repository URL is given for the study's own custom scripts.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Institutes of Health grant R35GM124698”
A specific award number is given, attached to the funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Genomic DNA was extracted using the GeneJET genomic DNA purification kit (Thermo Scientific).”
The paper names specific instruments, kits, and software versions used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“The final genome assembly was annotated using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). The resulting genome assembly consists of two chromosomes and one megaplasmid. The assembly is full length with 3 contigs and a total size of 5.63 Mb (chromosome I [Chr I], 3.48 Mb; Chr II, 1.91 Mb; plasmid, 244.69 kb). The OCN008 genome has a G+C content of 45.7%, and those of individual molecules are 45.7% (Chr I), 45.3% (Chr II), and 49.7% (plasmid). The NCBI annotation revealed 4,989 protein-coding sequences, 12 5S rRNAs, 11 16S RNAs, 11 23S rRNAs, and 116 tRNAs.”— not found in the paper; verdict downgraded
Variable-level definitions (sizes, features) are provided inside the article, but no documentation object (README, codebook) is said to accompany the deposited data. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.312
From this paper's citation signal
Citation Network Contribution
0.0263
From 1 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 4 citers.
HHS | National Institutes of Health
Grant: R35GM124698
National Institutes of Health
Grant: 5R35GM124698-07
Quorum sensing regulation of bacterial development
FWCI
0.07
Citation Percentile
0.4%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals