Complete genome sequence of human papillomavirus 31 isolated from the human cervical cell line, CIN612 9E is a dataset published in Microbiology Resource Announcements (2024). On theSindex it has a DataRank of 0.165, placing it in the top 70.2% of the data-sharing corpus. It has been cited 2 times. Its calibrated FAIR score is 58/100.
Ranks in the top 70% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The HPV31 9E sequence has been deposited in Genbank - accession number PP706107 . Raw reads have been submitted to NCBI's SRA, at PRJNA1108636 .”
GenBank accession PP706107 and BioProject PRJNA1108636 are repository accessions, which are persistent identifiers.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The HPV31 9E sequence has been deposited in Genbank - accession number PP706107 . Raw reads have been submitted to NCBI's SRA, at PRJNA1108636 . The cloned genome is available from Addgene #221009.”
Genbank, NCBI SRA, and Addgene are named data repositories.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The HPV31 9E sequence has been deposited in Genbank - accession number PP706107 . Raw reads have been submitted to NCBI's SRA, at PRJNA1108636 .”
The dataset identifiers appear in the body text of the data availability statement, not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The HPV31 9E sequence has been deposited in Genbank - accession number PP706107 . Raw reads have been submitted to NCBI's SRA, at PRJNA1108636 . The cloned genome is available from Addgene #221009.”
The statement points to repository records with accessions.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The 9E HPV31 genome (7892 bp) is 99.02% identical to the HPV31 J0435 reference genome (7912 bp), with 160 nucleotide differences.”
The dataset content is described in running prose without an itemised inventory.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The HPV31 9E sequence has been deposited in Genbank - accession number PP706107 . Raw reads have been submitted to NCBI's SRA, at PRJNA1108636 . The cloned genome is available from Addgene #221009.”
All data are deposited in public repositories with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The HPV31 9E sequence has been deposited in Genbank - accession number PP706107 . Raw reads have been submitted to NCBI's SRA, at PRJNA1108636 . The cloned genome is available from Addgene #221009.”
The paper describes the deposit of data in repositories but does not apply an explicit access-level label.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from a cell line and are not sensitive; no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will be retained. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“The 9E HPV31 genome (7892 bp) is 99.02% identical to the HPV31 J0435 reference genome (7912 bp)”
Identifiers for the reference genome (J0435) and a variant (QV17700) are given as external resources.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code is mentioned as being produced or made available.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“HHS | NIH | NIAID | Division of Intramural Research (DIR, NIAID) AI000713”
An award number (AI000713) is provided alongside the funder name. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Circular DNA was amplified by the rolling circle Illustra TempliPhi 100/500 Amplification Kit (GE Healthcare), digested and cloned into the HindIII site of pBR322. The cloned genome was sequenced by Plasmidsaurus using Oxford Nanopore Technology. The library was generated with The Rapid Barcoding Kit 96 V14 (SQK-RBK114.96) and analyzed on a PromethION P24 with R10.4.1 flowcell.”
Specific instruments, kits, and software are named.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“TABLE 1 Major differences among HPV31 REF, HV31 9E, and HPV31 B2 sequences”
Variable definitions are provided in a table inside the article, not as a separate documentation object shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.165
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →HHS | NIH | NIAID | Division of Intramural Research
Grant: AI000713
Intramural NIH HHS
Grant: Z01 AI000713
FWCI
0.84
Citation Percentile
0.7%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals