Whole-genome sequence of Haemophilus parainfluenzae EL1 isolated from healthy supragingival plaque is a dataset published in Microbiology Resource Announcements (2023). On theSindex it has a DataRank of 0.165, placing it in the top 70.2% of the data-sharing corpus. It has been cited 2 times. Its calibrated FAIR score is 63/100.
Ranks in the top 70% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“This whole genome shotgun project has been deposited under BioProject PRJNA954350 (BioSample SAMN34140652 ) and under DDBJ/ENA/GenBank, accession number CP125087 , version CP125087.1 . Nanopore and Illumina reads can be accessed under the respective SRA accession numbers SRR24129362 and SRR25463078 .”
The paper provides repository accessions (BioProject, GenBank, SRA) which are persistent identifiers. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This whole genome shotgun project has been deposited under BioProject PRJNA954350 (BioSample SAMN34140652 ) and under DDBJ/ENA/GenBank, accession number CP125087 , version CP125087.1 . Nanopore and Illumina reads can be accessed under the respective SRA accession numbers SRR24129362 and SRR25463078 .”
The paper names BioProject, DDBJ/ENA/GenBank, and SRA as repositories. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“This whole genome shotgun project has been deposited under BioProject PRJNA954350 (BioSample SAMN34140652 ) and under DDBJ/ENA/GenBank, accession number CP125087 , version CP125087.1 . Nanopore and Illumina reads can be accessed under the respective SRA accession numbers SRR24129362 and SRR25463078 .”
The dataset identifier appears only in the body text, not in the reference list. [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“This whole genome shotgun project has been deposited under BioProject PRJNA954350 (BioSample SAMN34140652 ) and under DDBJ/ENA/GenBank, accession number CP125087 , version CP125087.1 . Nanopore and Illumina reads can be accessed under the respective SRA accession numbers SRR24129362 and SRR25463078 .”
The statement points to repository records with accessions. [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Assembly resulted in one circular contig with length of 2,153,240 bp. The GC content was 39.41%, and the N50 was 2,153,240. In total, 2,086 genes were identified. Of those, 2,005 are coding sequences and 1,990 protein-coding genes. Moreover, 7, 6, 6 (5S, 16S, and 23S) complete RNAs and 58 tRNAs were identified.”
The dataset content is described in running prose, not in a sectioned table or list. [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“This whole genome shotgun project has been deposited under BioProject PRJNA954350 (BioSample SAMN34140652 ) and under DDBJ/ENA/GenBank, accession number CP125087 , version CP125087.1 . Nanopore and Illumina reads can be accessed under the respective SRA accession numbers SRR24129362 and SRR25463078 .”
The data are deposited in public repositories with no stated precondition. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“This whole genome shotgun project has been deposited under BioProject PRJNA954350 (BioSample SAMN34140652 ) and under DDBJ/ENA/GenBank, accession number CP125087 , version CP125087.1 . Nanopore and Illumina reads can be accessed under the respective SRA accession numbers SRR24129362 and SRR25463078 .”
The paper describes the action of depositing and accessing the data without labeling the access level explicitly. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The data are not sensitive human-subject data, and no gatekeeper is named.”— not found in the paper; verdict downgraded
The study involves a bacterial genome, not human data, and no access gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state any retention period or availability timing beyond the current deposit.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name the file format of the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data/metadata community standard is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for an external resource other than the own dataset is provided.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license for the data is stated; the CC-BY applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“accession number CP125087 , version CP125087.1”
The paper provides a version token for the deposited data. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code availability is mentioned; only third-party tools are named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was funded by the NIDCR/NIH (R01DE027958 – M.R.) and the USDA National Institute of Food and Agriculture, Hatch Formula project accession number 1017848 (M.R.).”
The paper states specific grant numbers for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“DNA was extracted using DNeasy Blood and Tissue Kit (Qiagen) following manufacturer’s instructions.”
The paper names specific kits, instruments, and software versions used for data production. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
The paper does not mention any documentation object (README, codebook) that accompanies the data, and the data description is in running text, not a table or appendix. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.165
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →HHS | NIH | National Institute of Dental and Craniofacial Research
Grant: R01DE027958
U.S. Department of Agriculture
Grant: 1017848
National Institutes of Health
Grant: 5R01DE027958-05
Mechanisms underlying spatial interaction in the oral microbiota
FWCI
0.29
Citation Percentile
0.5%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals