Nearly Complete Genome Sequence of Brugia pahangi FR3 is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0.349, placing it in the top 50.4% of the data-sharing corpus. It has been cited 6 times, with 3 citing works in its 1-hop citation network. Its calibrated FAIR score is 31/100.
Ranks in the top 50% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
The paper gives a GenBank accession number for the genome assembly, which is a persistent identifier scheme. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (2/4 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This genome has been deposited in GenBank under accession number JAAVKF000000000 . The raw data have been deposited in the SRA under the accession numbers ...”— not found in the paper; verdict downgraded
The paper names GenBank and SRA, which are established data repositories listed in re3data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/4 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“This genome has been deposited in GenBank under accession number JAAVKF000000000 . The version described in this paper is the first version, JAAVKF010000000 . The raw data have been deposited in the SRA under the accession numbers ...”— not found in the paper; verdict downgraded
The dataset's identifier (accession numbers) appears only in the body text (Data availability section) and not as a reference-list entry. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/4 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. This genome has been deposited in GenBank under accession number JAAVKF000000000 . The version described in this paper is the first version, JAAVKF010000000 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”— not found in the paper; verdict downgraded
The data-availability statement points to archived data in a public repository (GenBank, SRA) with accession numbers, which is Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
The paper describes the dataset's size and composition in running prose, not in an itemised inventory. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (2/4 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Data availability. This genome has been deposited in GenBank under accession number JAAVKF000000000 . The version described in this paper is the first version, JAAVKF010000000 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”— not found in the paper; verdict downgraded
The data are deposited in public repositories (GenBank, SRA) with no stated precondition, embargo, or restriction; they are openly accessible now. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Data availability. This genome has been deposited in GenBank under accession number JAAVKF000000000 . The version described in this paper is the first version, JAAVKF010000000 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”— not found in the paper; verdict downgraded
The paper gives a route to the data (deposited in GenBank and SRA) but does not explicitly label the access level with a standard term like 'open access' or 'publicly available'; the route is described but not labelled. [downgraded to 'no' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a parasite genome sequence, not human subjects or sensitive data, so no gatekeeper is named or required.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Data availability. This genome has been deposited in GenBank under accession number JAAVKF000000000 . The version described in this paper is the first version, JAAVKF010000000 . The raw data have been deposited in the SRA under the accession numbers ...”— not found in the paper; verdict downgraded
The paper states the data are deposited now and available, but does not explicitly state a retention period or permanent archiving commitment. [downgraded to 'no' — no verifiable quote from the paper]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the deposited data (e.g., FASTA, FASTQ, not stated).
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community standard for data or metadata (e.g., MIAME, BIDS, GO) is named; the paper uses standard bioinformatics tools but not a registered standard.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
The paper references the Brugia malayi genome with a DOI in the reference list, providing an identifier for a resource other than its own dataset. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/4 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence artefact is attached to the data; the CC BY 4.0 licence applies to the article, not the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The version described in this paper is the first version, JAAVKF010000000.”— not found in the paper; verdict downgraded
The paper provides a version token (JAAVKF010000000) for the genome assembly. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/4 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code availability statement is present; the study's own code is not mentioned.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“under grant U19AI110820”
The paper provides a specific grant number (U19AI110820) from a named funder (NIAID). [majority verdict 'yes' (3/4 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Illumina HiSeq 2500”
The paper names specific instruments, platforms, and software versions used to produce the data. [majority verdict 'yes' (3/4 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook) is mentioned as accompanying the data. [majority verdict 'no' (3/4 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.292
From this paper's citation signal
Citation Network Contribution
0.0573
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 3 citers.
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: U19AI110820
National Institutes of Health
Grant: 5U19AI110820-07
A Genomics Based Investigation of the Determinants of Polymicrobial Infectious Disease Outcomes
Fields of Study
Keywords
Sustainable Development Goals