Complete Genome Sequence of w Bp, the Wolbachia Endosymbiont of Brugia pahangi FR3 is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0.353, placing it in the top 50.1% of the data-sharing corpus. It has been cited 8 times, with 5 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 50% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“This genome has been deposited in GenBank under accession number CP050521 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , and SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”
The paper provides GenBank and SRA accession numbers, which are persistent identifiers in the identifiers.org scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This genome has been deposited in GenBank under accession number CP050521 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , and SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”
GenBank and SRA are named repositories in re3data/FAIRsharing. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“This genome has been deposited in GenBank under accession number CP050521 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , and SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”
The dataset identifiers appear in the body text (data availability statement), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“This genome has been deposited in GenBank under accession number CP050521 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , and SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”
The statement points to repository records with accession numbers (Colavizza category 3). [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The complete, circular genome is 1,072,967 bp.”
The dataset's extent is described in running prose, with no itemised inventory or section. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“This genome has been deposited in GenBank under accession number CP050521 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , and SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”
The data are deposited in public repositories with no stated precondition for access. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“This genome has been deposited in GenBank under accession number CP050521 . The raw data have been deposited in the SRA under the accession numbers SRX4135331 , SRX4135330 , SRX4135329 , SRX4135328 , SRX4135327 , SRX4135326 , SRX4135325 , SRX4135324 , SRX4135323 , SRX4135322 , SRX4135321 , SRX4135320 , SRX4135319 , SRX4135318 , SRX4135317 , SRX4135316 , SRX4135315 , SRX4135314 , SRX4135313 , and SRX4135312 (PacBio), SRX7658407 , SRX7658383 , SRX7658378 , SRX7658377 , SRX7658352 , SRX7658349 , SRX7658341 , SRX7658327 , SRX7658323 , SRX7658322 , SRX7658317 , and SRR10997235 (Illumina), and SRR11565851 , SRR11472020 , SRR11565849 , and SRR11565826 (MinION).”
The paper states the data are deposited in GenBank and SRA but does not explicitly label the access level as 'open access' or similar, requiring inference from the action. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a bacterial genome sequence, not human-subject or sensitive, and no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states when the data become available or how long they persist. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data or metadata standard (e.g., MIAME, MINSEQE) is named.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier for a non-own resource is provided in the text; external resources are cited only as references.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is named for the data; the CC BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date pins the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code locator is provided; only third-party tools are named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This project was funded by federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, under grant U19AI110820.”
A grant number (U19AI110820) is given.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“For short-read sequencing, genomic DNA from B. pahangi FR3 was acquired from BEI Resources, KAPA Hyper libraries were constructed, and 107,643,863 Illumina HiSeq 2500 paired-end 150-bp reads were generated”
Specific instruments and software (Illumina HiSeq 2500, Canu v1.8, etc.) are named in the methods. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, codebook, data dictionary) is named as accompanying the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.330
From this paper's citation signal
Citation Network Contribution
0.0232
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 5 citers.
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: U19AI110820
National Institutes of Health
Grant: 5U19AI110820-07
A Genomics Based Investigation of the Determinants of Polymicrobial Infectious Disease Outcomes
FWCI
0.53
Citation Percentile
0.7%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals