Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07 is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0.104, placing it in the top 78.1% of the data-sharing corpus. It has been cited 1 time. Its calibrated FAIR score is 54/100.
Ranks in the top 78% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“GenBank accession no. (version no.) JAAVJB000000000 ( JAAVJB010000000 )”
The GenBank accession number JAAVJB000000000 is a persistent identifier in a repository scheme (DDBJ/ENA/GenBank). [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Data availability. The whole-genome shotgun projects, BioSample material, and raw reads have been deposited in DDBJ/ENA/GenBank”
DDBJ/ENA/GenBank is a curated data repository that issues persistent identifiers and commits to retention. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“GenBank accession no. (version no.) JAAVJB000000000 ( JAAVJB010000000 )”
The identifier appears only in the body text table, not in a reference list entry. [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The whole-genome shotgun projects, BioSample material, and raw reads have been deposited in DDBJ/ENA/GenBank under the accession numbers listed in Table 1.”— not found in the paper; verdict downgraded
The statement points to a repository record with accession numbers, meeting Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“TABLE 1 Characteristics of the draft genome sequences from the Streptomyces strains described in this work”
The paper provides an itemised table characterizing the genome sequences (size, G+C content, scaffolds, etc.), which is a structural inventory of the dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Data availability. The whole-genome shotgun projects, BioSample material, and raw reads have been deposited in DDBJ/ENA/GenBank under the accession numbers listed in Table 1.”— not found in the paper; verdict downgraded
The data are deposited in a public repository (GenBank) which is freely accessible without any stated precondition. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Data availability. The whole-genome shotgun projects, BioSample material, and raw reads have been deposited in DDBJ/ENA/GenBank under the accession numbers listed in Table 1.”— not found in the paper; verdict downgraded
The paper states the data are deposited in a public repository, implying open access, but does not use an explicit access-level label such as 'open access' or 'publicly available'. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are microbial genome sequences and not sensitive; no gatekeeper is mentioned for these data.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Data availability. The whole-genome shotgun projects, BioSample material, and raw reads have been deposited in DDBJ/ENA/GenBank under the accession numbers listed in Table 1.”— not found in the paper; verdict downgraded
The paper states the data are deposited (available now) but does not mention how long they will persist, so it is an availability-timing statement only. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name the file format of the deposited data (e.g., FASTA, FASTQ); only raw reads and assemblies are mentioned without format tokens.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not explicitly name any community standard checklist, ontology, or metadata schema applied to the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“BHZH00000000”
The paper provides the GenBank accession BHZH00000000 for the previously published genome of Streptomyces bohaiensis, which is an identifier for an external dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data; the paper's CC BY 4.0 license applies to the article, not the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“JAAVJB010000000”
The GenBank accession includes a version number (JAAVJB010000000), identifying the specific snapshot of the genome assembly.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code availability statement is provided; only third-party software is mentioned.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“5R21AI085540-02”
The paper provides a specific award/grant number (5R21AI085540-02) from NIH/NIAID.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“SPAdes v. 3.14.0”
The paper names SPAdes v. 3.14.0, a specific software tool used for genome assembly, providing provenance information.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“TABLE 1 Characteristics of the draft genome sequences from the Streptomyces strains described in this work”
Variable definitions are provided inside the article table, not as a separate documentation object. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →Southern Oregon University
Grant: startup funds
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: 5R21AI085540-02
OSU | Oregon Sea Grant, Oregon State University
Grant: NA10OAR4170064 (project number R/BT-52)
NIAID NIH HHS
Grant: R21 AI085540
FWCI
0.07
Citation Percentile
0.4%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals