Complete Genome Sequence of Salmonella enterica Serovar Typhi Strain ISP2825 is a dataset published in Microbiology Resource Announcements (2021). On theSindex it has a DataRank of 0.385, placing it in the top 47.3% of the data-sharing corpus. It has been cited 8 times, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 47% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“GCF_019645915.1”
The paper provides a GenBank accession (GCF_019645915.1), which is a persistent identifier in the NCBI scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“GenBank”
The paper names GenBank as the repository where the data are deposited; GenBank is a well-known data repository listed in re3data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The complete genome sequence of S. Typhi ISP2825 has been deposited at GenBank under accession number GCF_019645915.1 or CP080960.1 , BioProject accession number PRJNA753482 , BioSample accession number SAMN20695325 , and Sequence Read Archive (SRA) accession number SRR15411315 .”
The dataset's identifiers appear only in the body text (Data availability section), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The complete genome sequence of S. Typhi ISP2825 has been deposited at GenBank under accession number GCF_019645915.1 or CP080960.1 , BioProject accession number PRJNA753482 , BioSample accession number SAMN20695325 , and Sequence Read Archive (SRA) accession number SRR15411315 .”
The statement points to a repository record with accessions, matching Colavizza category 3 (link to archived data in a public repository). [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“TABLE 1 Features of the complete genome sequence of S. Typhi ISP2825”
The paper includes a structured table (Table 1) that itemizes features of the genome (length, gene counts, etc.), constituting an itemised inventory.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The complete genome sequence of S. Typhi ISP2825 has been deposited at GenBank under accession number GCF_019645915.1 or CP080960.1 , BioProject accession number PRJNA753482 , BioSample accession number SAMN20695325 , and Sequence Read Archive (SRA) accession number SRR15411315 .”
The data are deposited in a public repository (GenBank) with accessions, and no precondition (registration, embargo, etc.) is stated. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The complete genome sequence of S. Typhi ISP2825 has been deposited at GenBank under accession number GCF_019645915.1 or CP080960.1 , BioProject accession number PRJNA753482 , BioSample accession number SAMN20695325 , and Sequence Read Archive (SRA) accession number SRR15411315 .”
The paper describes an access action (deposition at GenBank) but does not apply an explicit access-level label to the data. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a bacterial genome sequence, not human-subject or sensitive, and no gatekeeper is named; the data are openly deposited without any access control.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper states only that the data have been deposited; it makes no commitment about how long they will persist. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name a specific file format for the released data (e.g., FASTA, GenBank flat file); only 'complete genome sequence' is mentioned.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, GO, ISA-Tab) is named; only tools and pipelines are mentioned. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GCF_000195995.1”
The paper gives GenBank accession numbers for reference genomes (CT18 and Ty2) that are external resources used for alignment.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The CC BY 4.0 license applies to the article, not explicitly to the data; no license for the data is stated.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“GCF_019645915.1”
The GenBank accession includes a version number (the .1 suffix), identifying a specific snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code repository, DOI, or supplementary material link is provided for custom code; only third-party tools are named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01 AI137345”
The paper gives NIH grant numbers (R01 AI137345, AI139625, AI141514) attached to the funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Flye v2.8.3”— not found in the paper; verdict downgraded
The paper names specific instruments, kits, and software (e.g., Flye v2.8.3) used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“TABLE 1 Features of the complete genome sequence of S. Typhi ISP2825”
Variable definitions (features of the genome) are provided inside the article in Table 1, but no README or codebook is said to accompany the data deposit.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.330
From this paper's citation signal
Citation Network Contribution
0.0549
From 1 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 1 citer.
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: AI137345
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: AI141514
HHS | NIH | National Institute of Allergy and Infectious Diseases
Grant: and AI139625
NIAID NIH HHS
Grant: R01 AI139625
NIAID NIH HHS
Grant: R01 AI141514
NIAID NIH HHS
Grant: R01 AI137345
National Institutes of Health
Grant: 5R01AI137345-03
Cracking Salmonella Typhis Secret Code: Understanding Pathogenic Mechanisms of Salmonella Typhi Toxin
National Institutes of Health
Grant: 3R01AI141514-03S1
Salmonella Typhi: Enhancement of Endemic Potential through its Unique Virulence Factors
FWCI
1.05
Citation Percentile
0.8%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals