Draft genome sequence of a black yeast fungus Exophiala xenobiotica isolated from La Brea Tar Pits is a dataset published in Microbiology Resource Announcements (2024). On theSindex it has a DataRank of 0.104, placing it in the top 77.8% of the data-sharing corpus. It has been cited 1 time. Its calibrated FAIR score is 71/100.
Ranks in the top 78% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“This Whole Genome project has been deposited at DDBJ/ENA/GenBank under the accession JAPDRM000000000.1 and SRA accession of SRR22028093.”
The paper provides a persistent identifier (GenBank accession JAPDRM000000000.1 and SRA accession SRR22028093) for the dataset.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“This Whole Genome project has been deposited at DDBJ/ENA/GenBank under the accession JAPDRM000000000.1 and SRA accession of SRR22028093.”
The paper names GenBank and SRA as the repositories holding the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“This Whole Genome project has been deposited at DDBJ/ENA/GenBank under the accession JAPDRM000000000.1 and SRA accession of SRR22028093.”
The dataset identifiers appear in the body text (DATA AVAILABILITY section) but not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“This Whole Genome project has been deposited at DDBJ/ENA/GenBank under the accession JAPDRM000000000.1 and SRA accession of SRR22028093. Genome assembly, annotation and phylogenetic assessment pipeline and related code are archived at DOI 10.5281/zenodo.8021900 (39). The culture has been deposited in the USDA ARS Culture Collection (NRRL) under the strain accession NRRL 64630.”— not found in the paper; verdict downgraded
The statement points to repository records with accessions (Colavizza category 3). [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (2/4 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“TABLE 1 Strain and species designation, isolation source, sequencing read, assembly, and annotation statistics”
The paper includes an itemised inventory (Table 1) describing the dataset's files and variables.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“This Whole Genome project has been deposited at DDBJ/ENA/GenBank under the accession JAPDRM000000000.1 and SRA accession of SRR22028093.”
The data are deposited in public repositories with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“This Whole Genome project has been deposited at DDBJ/ENA/GenBank under the accession JAPDRM000000000.1 and SRA accession of SRR22028093.”
The paper describes the deposit action but does not explicitly label the access level (e.g., 'open access'). [majority verdict 'partial' (3/4 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
majority verdict 'no' (3/4 passes agreed)
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“accession number KX426972.1”— not found in the paper; verdict downgraded
The paper cites an external reference sequence identifier (KX426972.1) used for species identification. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (2/4 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“JAPDRM000000000.1”
The GenBank accession includes a version suffix (.1), indicating a specific snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Genome assembly, annotation and phylogenetic assessment pipeline and related code are archived at DOI 10.5281/zenodo.8021900”
The paper provides a machine-resolvable DOI for the code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Science Foundation (NSF) DBI-1429826”
The paper includes a specific award number attached to a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“DNA sequencing libraries were prepared in the Institute for Integrative Genome Biology Genomics Core at University of California, Riverside (Riverside, CA) with Nextera DNA Flex Library kit and sequenced with 2 × 150 bp on Illumina NovoSeq 6000 in the QB3 Genomics Facility at the University of California, Berkeley.”
The paper names specific instruments, kits, and software used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“TABLE 1 Strain and species designation, isolation source, sequencing read, assembly, and annotation statistics”
Variable definitions are provided inside the article (Table 1), but no separate documentation object is named as shipped with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →HHS | National Institutes of Health
Grant: S10-OD016290
National Science Foundation
Grant: DBI-1429826
NIH HHS
Grant: S10 OD016290
National Science Foundation
Grant: DBI-2215705
National Institutes of Health
Grant: 1S10OD016290-01A1
Acquisition of a Scalable Storage Cluster for Data Intensive NIH Research
National Science Foundation
Grant: 2215705
Research Infrastructure: MRI: Acquisition of a Big Data HPC Cluster for Interdisciplinary Research and Training
National Science Foundation
Grant: 1429826
MRI: Acquisition of a Big Data Compute Cluster for Interdisciplinary Research
FWCI
0.23
Citation Percentile
0.4%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals