Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria is a dataset published in Microbiology Resource Announcements (2023). On theSindex it has a DataRank of 0.332, placing it in the top 52% of the data-sharing corpus. It has been cited 4 times, with 4 citing works in its 1-hop citation network. Its calibrated FAIR score is 42/100.
Ranks in the top 52% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Raw metagenomic sequences and the MAGs can be found at NCBI under BioProject accession number PRJNA876044.”— not found in the paper; verdict downgraded
The paper gives a BioProject accession (PRJNA876044), which is a persistent identifier scheme. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Raw metagenomic sequences and the MAGs can be found at NCBI under BioProject accession number PRJNA876044.”— not found in the paper; verdict downgraded
NCBI is a named data repository. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Raw metagenomic sequences and the MAGs can be found at NCBI under BioProject accession number PRJNA876044.”— not found in the paper; verdict downgraded
The dataset identifier (PRJNA876044) appears only in the body text, not as a reference-list entry. [downgraded to 'no' — no verifiable quote from the paper]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Raw metagenomic sequences and the MAGs can be found at NCBI under BioProject accession number PRJNA876044.”— not found in the paper; verdict downgraded
The statement points to a repository record (NCBI BioProject with accession number), Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1 Accession numbers, assembly statistics, and taxonomic assignments for MAGs”
Table 1 itemises the MAGs with their accession numbers and properties, constituting an itemised inventory. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Raw metagenomic sequences and the MAGs can be found at NCBI under BioProject accession number PRJNA876044.”— not found in the paper; verdict downgraded
The data are deposited in a public repository (NCBI) with no stated precondition. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper does not apply an explicit access-level label to the data; the availability statement merely states the data can be found at NCBI.
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are from murine samples, not human subjects, and no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Raw metagenomic sequences and the MAGs can be found at NCBI under BioProject accession number PRJNA876044.”— not found in the paper; verdict downgraded
The paper states the data are available now (present tense) but does not mention how long they will persist. [downgraded to 'no' — no verifiable quote from the paper]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“the resulting paired-end metagenomic fastq files were trimmed and quality controlled”— not found in the paper; verdict downgraded
The paper names FASTQ, an open community-standard format. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“the closest genome in the Genome Taxonomy Database (GTDB)”
The paper uses GTDB, a community-standard taxonomy database, to classify the MAGs. [majority verdict 'yes' (3/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“https://doi.org/10.25982/116829.47/1887425”
The paper gives a DOI for the KBase narrative, which is a resource (analysis workflow) that the data depend on. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper's CC BY 4.0 license is for the article, not the data; no license is attached to the data itself.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the deposited data; the BioProject accession is persistent but not versioned.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“https://doi.org/10.25982/116829.47/1887425”
The paper provides a DOI for a KBase narrative, which contains the analysis workflow and code.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“R01 HD095412”
Specific grant numbers are given for the funding of the work.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Illumina NovaSeq system”
The paper names specific instruments and software versions (e.g., Illumina NovaSeq, fastp v0.12.4, metaSPAdes v3.15.3).
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1 Accession numbers, assembly statistics, and taxonomic assignments for MAGs”
Variable definitions (MAG properties) are provided inside the article in Table 1, but no documentation object is shipped with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.241
From this paper's citation signal
Citation Network Contribution
0.0911
From 3 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 4 citers.
HHS | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development
Grant: HD095412
NIH HHS
Grant: S10 OD026929
NICHD NIH HHS
Grant: R01 HD095412
NIDDK NIH HHS
Grant: P30 DK063491
National Institutes of Health
Grant: 5R01HD095412-02
Role of the Gut Microbiome in Polycystic Ovary Syndrome
National Institutes of Health
Grant: 3P30DK063491-04S1
Diabetes Endocrinology Research Center
National Institutes of Health
Grant: 1S10OD026929-01
Illumina NovaSeq 6000 Sequencing System
Fields of Study
Keywords