Genome Sequence of the Early 20th-Century Extreme Halophile Halobacterium sp. Strain NRC-34001 is a dataset published in Microbiology Resource Announcements (2022). On theSindex it has a DataRank of 0.258, placing it in the top 59.2% of the data-sharing corpus. It has been cited 3 times, with 2 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 59% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The Halobacterium sp. NRC-34001 genome sequence has been deposited at GenBank (accession numbers CP085884.1 , CP085882.1 , CP085883.1 ).”
The paper provides GenBank accession numbers, which are persistent identifier schemes.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The Halobacterium sp. NRC-34001 genome sequence has been deposited at GenBank (accession numbers CP085884.1 , CP085882.1 , CP085883.1 ). The raw data are available in the NCBI Sequence Read Archive under the accession number SRR16600243 and the BioProject accession number PRJNA412908 .”
The paper names GenBank and NCBI Sequence Read Archive as repositories. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The Halobacterium sp. NRC-34001 genome sequence has been deposited at GenBank (accession numbers CP085884.1 , CP085882.1 , CP085883.1 ).”
The dataset identifiers appear only in body text, not in the reference list. [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The Halobacterium sp. NRC-34001 genome sequence has been deposited at GenBank (accession numbers CP085884.1 , CP085882.1 , CP085883.1 ). The raw data are available in the NCBI Sequence Read Archive under the accession number SRR16600243 and the BioProject accession number PRJNA412908 .”
The statement points to repository records with accession numbers, fitting Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The GC-rich genome was found to consist of a large circular chromosome (2,012,898 bp; GC content, 67.9%) and 2 plasmids, pHcu_235 (235,323 bp; GC content, 59.8%) and pHcu_43 (42,817 bp, GC content, 57.8%).”
The paper describes the genome in running prose, not an itemised inventory or table.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The Halobacterium sp. NRC-34001 genome sequence has been deposited at GenBank (accession numbers CP085884.1 , CP085882.1 , CP085883.1 ). The raw data are available in the NCBI Sequence Read Archive under the accession number SRR16600243 and the BioProject accession number PRJNA412908 .”
The data are deposited in public repositories with no stated precondition. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw data are available in the NCBI Sequence Read Archive”
The paper describes the action of data being available in a repository but does not explicitly label the access level (e.g., 'open access'). [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not human-subject or sensitive, so no gatekeeper is mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will be retained or any temporal commitment. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
The paper does not name a community data/metadata standard. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“obtained from the American Type Culture Collection (ATCC 33170)”
The paper gives an identifier (ATCC 33170) for the strain used, an external resource. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper only licenses the article under CC-BY, not the data specifically.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“CP085884.1 , CP085882.1 , CP085883.1”
The GenBank accession numbers include version suffixes, indicating a specific snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code written for this study is mentioned or provided.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Work in the DasSarma laboratory is supported by NASA Exobiology grant 80NSSC17K0263 and NIH grant AI139808.”
The paper provides grant numbers with funders.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Single-molecule real-time (SMRT) sequencing was performed using the PacBio Sequel platform (Menlo Park, CA).”
The paper names specific instruments, kits, and software versions used in data generation. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary) is mentioned as accompanying the data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.208
From this paper's citation signal
Citation Network Contribution
0.0504
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 2 citers.
National Aeronautics and Space Administration
Grant: 80NSSC17K0263
HHS | National Institutes of Health
Grant: AI139808
NIAID NIH HHS
Grant: R21 AI139808
Shared Services Center NASA
Grant: 80NSSC18K0263
National Institutes of Health
Grant: 1R21AI139808-01A1
ARCHAEAL-DERIVED SELF ADJUVANTING NANOPARTICLE MALARIA VACCINE
FWCI
0.24
Citation Percentile
0.5%
Citation Trend
Fields of Study
Keywords