Draft Genome Sequences of Strains TAV3 and TAV4 ( Verrucomicrobia : Opitutaceae ), Isolated from a Wood-Feeding Termite, and In Silico Analysis of Their Polysaccharide-Degrading Enzymes is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0.375, placing it in the top 48% of the data-sharing corpus. It has been cited 6 times, with 3 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 48% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 .”
The paper provides GenBank accession numbers, which are persistent identifiers in the NCBI scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 .”
The data are deposited in GenBank (DDBJ/ENA/GenBank), a recognized data repository. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 . The NCBI BioProject and BioSample accession numbers for the TAV3 project are PRJNA321366 and SAMN04992812 , respectively. The TAV3 raw reads were deposited in the SRA under accession numbers SRR10174322 (PacBio) and SRR3537542 (Illumina). The NCBI BioProject and BioSample accession numbers for the TAV4 project are PRJNA321367 and SAMN04992813 , respectively. The TAV4 raw reads were deposited in the SRA under accession numbers SRR10176387 (PacBio) and SRR3537605 (Illumina).”
The dataset identifiers appear only in the body text (Data Availability section), not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 . The NCBI BioProject and BioSample accession numbers for the TAV3 project are PRJNA321366 and SAMN04992812 , respectively. The TAV3 raw reads were deposited in the SRA under accession numbers SRR10174322 (PacBio) and SRR3537542 (Illumina). The NCBI BioProject and BioSample accession numbers for the TAV4 project are PRJNA321367 and SAMN04992813 , respectively. The TAV4 raw reads were deposited in the SRA under accession numbers SRR10176387 (PacBio) and SRR3537605 (Illumina).”
The data availability statement points to repository records with accession numbers, corresponding to Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The final assembly for strain TAV3 has a total length of 5,844,025 bp containing 4,976 genes predicted from 32 contigs, with an N 50 value of 294,410 bp. Similarly, the TAV4 genome assembly contains 5,914,438 bp with 5,039 genes from 33 contigs, with an N 50 value of 480,638 bp.”
The dataset description is given in running prose, not as an itemized inventory (section, table, or list). [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 . The NCBI BioProject and BioSample accession numbers for the TAV3 project are PRJNA321366 and SAMN04992812 , respectively. The TAV3 raw reads were deposited in the SRA under accession numbers SRR10174322 (PacBio) and SRR3537542 (Illumina). The NCBI BioProject and BioSample accession numbers for the TAV4 project are PRJNA321367 and SAMN04992813 , respectively. The TAV4 raw reads were deposited in the SRA under accession numbers SRR10176387 (PacBio) and SRR3537605 (Illumina).”
The data are deposited in public repositories with no stated precondition for access. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 . The NCBI BioProject and BioSample accession numbers for the TAV3 project are PRJNA321366 and SAMN04992812 , respectively. The TAV3 raw reads were deposited in the SRA under accession numbers SRR10174322 (PacBio) and SRR3537542 (Illumina). The NCBI BioProject and BioSample accession numbers for the TAV4 project are PRJNA321367 and SAMN04992813 , respectively. The TAV4 raw reads were deposited in the SRA under accession numbers SRR10176387 (PacBio) and SRR3537605 (Illumina).”
The paper describes the data deposition in public repositories but does not explicitly label the access level (e.g., 'open access') for the data. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The whole-genome sequences and annotations for strains TAV3 and TAV4 have been deposited under the DDBJ/ENA/GenBank accession numbers NZ_LXWT00000000 and NZ_LXWU00000000 . The NCBI BioProject and BioSample accession numbers for the TAV3 project are PRJNA321366 and SAMN04992812 , respectively. The TAV3 raw reads were deposited in the SRA under accession numbers SRR10174322 (PacBio) and SRR3537542 (Illumina). The NCBI BioProject and BioSample accession numbers for the TAV4 project are PRJNA321367 and SAMN04992813 , respectively. The TAV4 raw reads were deposited in the SRA under accession numbers SRR10176387 (PacBio) and SRR3537605 (Illumina).”
The data are not sensitive (bacterial genome sequences) and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No statement about when the data are available or how long they persist is provided. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data (e.g., FASTA, FASTQ).
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“A comprehensive in silico analysis of the carbohydrate-active enzyme (CAZy) profiles identified 433 (8.7% of total) and 431 (8.5% of total) genes in strains TAV3 and TAV4, respectively, as belonging to one of the CAZy families.”— not found in the paper; verdict downgraded
The paper uses CAZy families, a community standard vocabulary for carbohydrate-active enzymes. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (2/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier (accession, DOI, etc.) for an external resource is provided in the text.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license is stated for the data; the CC-BY license applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No custom code is mentioned; only third-party tools are used.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“supported by NIH shared instrumentation grant 1S10OD010786-01.”
An NIH grant number is provided. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Reads were quality checked using FastQC ( 5 ), and a hybrid assembly was performed using reads from the Illumina and PacBio runs with Unicycler v0.4.6.0.”— not found in the paper; verdict downgraded
The paper names specific software and sequencing platforms used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (e.g., README, data dictionary) is named as accompanying the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.292
From this paper's citation signal
Citation Network Contribution
0.0828
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 3 citers.
NIH HHS
Grant: S10 OD010786
National Institutes of Health
Grant: 1S10OD010786-01
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencin
FWCI
0.96
Citation Percentile
0.8%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals