Complete Genome Sequence of Human Oral Saccharibacterium “ Candidatus Nanosynbacter sp. HMT352” Strain KC1 is a dataset published in Microbiology Resource Announcements (2022). On theSindex it has a DataRank of 0.156, placing it in the top 70.2% of the data-sharing corpus. It has been cited 1 time, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 63/100.
Ranks in the top 70% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The “Cand. Nanosynbacter sp. HMT352 ” strain KC1 genome sequence has been deposited in GenBank under the accession number CP089520 .”
The paper provides a GenBank accession number (CP089520), which is a persistent identifier scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The “Cand. Nanosynbacter sp. HMT352 ” strain KC1 genome sequence has been deposited in GenBank”
GenBank is a named data repository (listed in re3data/FAIRsharing). [majority verdict 'yes' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The “Cand. Nanosynbacter sp. HMT352 ” strain KC1 genome sequence has been deposited in GenBank under the accession number CP089520 .”
The dataset identifier appears only in the body text (data availability section), not as a reference-list entry. [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The “Cand. Nanosynbacter sp. HMT352 ” strain KC1 genome sequence has been deposited in GenBank under the accession number CP089520 . The version described in this paper is the first version, CP089520.1. The Illumina reads have been deposited in SRA under the accession number SRR17194431 .”
The data-availability statement points to a repository record (GenBank and SRA) with accession numbers, matching Colavizza category 3. [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The chromosome of HMT352-KC1 encodes 675 proteins, 42 tRNAs, one rRNA operon (23S, 1S6, and 5.8S genes), and 2 noncoding RNAs (ncRNAs).”
The dataset content is described in running prose (a single sentence listing gene counts) rather than an itemised section, table, or list.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The “Cand. Nanosynbacter sp. HMT352 ” strain KC1 genome sequence has been deposited in GenBank under the accession number CP089520 .”
The data availability statement provides a direct route to the data in GenBank and SRA with no stated precondition. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
The paper contains no sentence that labels the access level of the data (e.g., 'open access', 'freely available'). [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The paper does not name any gatekeeper for the human-subject data; it only states that the data are deposited in public repositories.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not mention any retention period or persistence commitment for the data. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format (e.g., FASTA, FASTQ) for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, BIDS, an ontology) is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
The paper does not provide an identifier for any external resource (e.g., another dataset, reference database, software) other than the own dataset; the grant number is a funding identifier, not a data resource.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not state a license for the data; the CC BY 4.0 license applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The version described in this paper is the first version, CP089520.1.”
The paper explicitly states a version token ('CP089520.1') for the deposited genome sequence.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper does not provide any locator for code written by the authors; only third-party tools are mentioned.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This research was funded by grant R01DE024463 from the National Institute of Dental and Craniofacial Research (NIDCR) of the US National Institutes of Health.”
The paper gives a specific award/grant number (R01DE024463) attached to a named funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Genomic DNA was extracted using a Quick-DNA Fungal/Bacterial Midiprep Kit (Zymo Research).”
The paper names specific instruments, kits, and software (e.g., Quick-DNA kit, MiSeq, Trimmomatic v0.36) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (e.g., README, data dictionary) is mentioned as accompanying the data, and no variable-definition table appears in the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0.0519
From 1 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 1 citer.
HHS | NIH | National Institute of Dental and Craniofacial Research
Grant: R01DE024463
National Institutes of Health
Grant: 5R01DE024463-05
Culturing of the uncultured: reverse genomics and multispecies consortia in oral
FWCI
0.08
Citation Percentile
0.4%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals