Genome Sequences of Two Grapevine Rupestris Stem Pitting-Associated Virus Variants from Vitis vinifera cv. Riesling in Idaho, USA is a dataset published in Microbiology Resource Announcements (2023). On theSindex it has a DataRank of 0.165, placing it in the top 70.2% of the data-sharing corpus. It has been cited 2 times. Its calibrated FAIR score is 29/100.
Ranks in the top 70% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The paper gives repository accession numbers (OQ134941, OQ134942, PRJNA931750) which are persistent identifiers in accepted schemes. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The paper names GenBank and NCBI Sequence Read Archive (SRA), both of which are curated public repositories. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The dataset identifiers appear only in the body text (data availability section), not as a reference-list entry. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The data-availability statement points to a repository record with accession numbers, fitting Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“One of the samples, CC04 from an own-rooted, 38-year-old Riesling vine collected in Nez Perce County, Idaho, yielded a large, 8,700-nucleotide (nt) contig (GRSPaV-ID1) that spanned six ORFs”
The dataset content is described in running prose without an itemized inventory section or table. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The paper provides a route to the data in public repositories with no stated precondition; the data are simply stated to be available. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The paper states that the data are available in public repositories but does not use an explicit access-level label such as 'open access' or 'freely available'; the availability must be inferred. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
“The data are not human-subject or sensitive; no gatekeeper is named.”— not found in the paper; verdict downgraded
The data are viral sequences from grapevines, not human subjects, so no gatekeeper is mentioned or required.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The paper states that the data are available now, but does not specify how long they will persist, so it is an availability-timing-only statement. [downgraded to 'no' — no verifiable quote from the paper]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
“No format token is named for the released data.”— not found in the paper; verdict downgraded
The paper does not specify the file format of the deposited data (e.g., FASTA, FASTQ).
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
“No proper-noun standard from either registry appears.”— not found in the paper; verdict downgraded
The paper does not name any data or metadata community standard such as MIAME, MINSEQE, or an ontology; only tools and methods are mentioned.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“exhibited 98.5% identity to the GRSPaV isolate 12G412 (GenBank accession number MZ484771 ) from British Columbia, Canada. The same Riesling sample also yielded three additional contigs of 2,514, 2,893, and 506 nt, which exhibited 98.3%, 98.6%, and 98.8% identity, respectively, to the GRSPaV isolate AMCF clone 3 (GenBank accession number MG938311 ) from France”
The paper provides identifiers (GenBank accession numbers) for other isolates used as references. [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
“This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.”— not found in the paper; verdict downgraded
The paper states a CC BY 4.0 license for the article, but no license is explicitly attached to the data themselves; the data are deposited in repositories with their own terms.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The coding-complete genome sequences of GSPaV-ID1 and GSPaV-ID2 are available in GenBank under accession numbers OQ134941 and OQ134942, respectively. The raw sequence data were deposited in the NCBI Sequence Read Archive (SRA) under BioProject accession number PRJNA931750.”— not found in the paper; verdict downgraded
The paper provides accession numbers but does not state a version token or a date for the snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“No code availability statement is provided.”— not found in the paper; verdict downgraded
The paper does not mention where the study's own code can be accessed; only third-party software is named.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was funded, in part, through grants from the Idaho State Department of Agriculture (ISDA) Specialty Crop Block Grant, the Idaho Wine Commission, the Northwest Center for Small Fruits Research, the USDA Agricultural Research Service (grants 5358-21220-002-18G, 2072-21000-057-00D, and 2072-21220-003-00D), the USDA National Institute of Food and Agriculture (Hatch projects IDA01560 and IDA01712), and the Idaho Agricultural Experiment Station. Data collection performed by the Institute for Interdisciplinary Data Sciences (IIDS) Genomics and Bioinformatics Resources Core at the University of Idaho was supported in part by NIH COBRE grant P30GM103324.”
The paper provides specific grant numbers (e.g., 5358-21220-002-18G, P30GM103324) attached to funders.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Total RNA was extracted using the Spectrum Plant total RNA kit (Sigma, St. Louis, MO) and, following ribodepletion using the RiboMinus Plant kit for RNA sequencing (Invitrogen), libraries were prepared using the Kapa RNA HyperPrep kit (Roche) with the NEXTflex unique dual index barcodes set C (Bioo Scientific). After bead-based size selection, the resulting libraries were multiplexed and subjected to high-throughput sequencing (HTS) on a NovaSeq 6000 platform through the University of Idaho Genomics and Bioinformatics Resources Core Facility.”
The paper names specific kits, instruments, and software versions used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“No documentation object is named as travelling with the data.”— not found in the paper; verdict downgraded
The paper does not include a README, data dictionary, or codebook, nor does it define variables in a table.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.165
From this paper's citation signal
Citation Network Contribution
0
Citation network not refreshed for this result
This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.
Learn more about DataRank methodology →U.S. Department of Agriculture
Grant: 5358-21220-002-18G
U.S. Department of Agriculture
Grant: 2072-21000-057-00D
U.S. Department of Agriculture
Grant: 2072-21220-003-00D
U.S. Department of Agriculture
Grant: IDA01560
U.S. Department of Agriculture
Grant: IDA01712
HHS | National Institutes of Health
Grant: P30GM103324
FWCI
0.58
Citation Percentile
0.8%
Citation Trend
Fields of Study
Keywords
Sustainable Development Goals