Complete Genome Sequence of Klebsiella pneumoniae Jumbo Phage Miami is a dataset published in Microbiology Resource Announcements (2021). On theSindex it has a DataRank of 0.498, placing it in the top 38.5% of the data-sharing corpus. It has been cited 8 times, with 8 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 38% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .”
The paper provides multiple persistent identifiers (GenBank, BioSample, BioProject, SRA) for the dataset.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .”
GenBank, BioSample, BioProject, and SRA are named repositories (NCBI).
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .”
The dataset identifiers appear only in the body text (Data availability section), not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .”
The statement points to repository records with accessions (Colavizza category 3). [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Miami possesses a 253,383-bp genome with a coding density of 94% and 300 predicted protein-coding genes, only 47 of which have a predicted function. The genome G+C content is 43.9%”
The dataset's content is described in running prose (size, coding density, gene count) without an itemised inventory (section, table, or list).
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .”
Deposition in public repositories (GenBank, SRA) implies unconditional open access with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Data availability. The genome sequence of phage Miami was deposited under GenBank accession no. MT701590 and BioSample accession no. SAMN14609641 . The BioProject accession no. is PRJNA222858 , and the SRA accession no. is SRR11558348 .”
The paper describes the action of depositing the data in public repositories with accessions, which implies openness but does not explicitly label the access level using standard vocabulary like 'open access'. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are a phage genome sequence, not human-subject or sensitive data, and no gatekeeper is named.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence states when the data become available or how long they persist.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data/metadata community standard (e.g., MIAME, ontology) or manuscript reporting guideline is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GenBank accession no. NDDK01000000”
The paper provides identifiers for external resources (e.g., other bacterial strains, phage genomes) used in the analysis. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper does not name a license for the data; the CC BY license applies to the article, not the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is given for the dataset; accessions are provided but without explicit versioning. [majority verdict 'no' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No code availability statement or locator is provided for custom code (if any).
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Science Foundation (award no. EF-0949351 and DBI-1565146)”
Award/grant numbers are given for the named funders.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Illumina iSeq 100 instrument”
The paper names specific instruments, kits, and software versions used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as travelling with the data, and no variable-definition table exists inside the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.330
From this paper's citation signal
Citation Network Contribution
0.168
From 5 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 8 citers.
HHS | National Institutes of Health
Grant: AI121689
National Science Foundation
Grant: EF-0949351
National Science Foundation
Grant: DBI-1565146
NIAID NIH HHS
Grant: R21 AI121689
NIAID NIH HHS
Grant: R33 AI121689
National Science Foundation
Grant: 0949351
Whole Phage Genomics: A Student-based Approach
National Institutes of Health
Grant: 5R21AI121689-02
Development of therapeutic bacteriophages against carbapenemase-resistant Klebsiella pneumoniae
Fields of Study
Keywords
Sustainable Development Goals