Whole-Genome Sequence of Streptomyces kaniharaensis Shomura and Niida SF-557 is a dataset published in Microbiology Resource Announcements (2020). On theSindex it has a DataRank of 0.361, placing it in the top 49.3% of the data-sharing corpus. It has been cited 5 times, with 2 citing works in its 1-hop citation network. Its calibrated FAIR score is 58/100.
Ranks in the top 49% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The draft genome sequence of Streptomyces kaniharaensis Shomura and Niida (BioProject number PRJNA574488 ) has been deposited in GenBank under the accession number WBOF00000000 .”
The paper provides a persistent identifier (BioProject PRJNA574488 and GenBank WBOF00000000) for the dataset. [majority verdict 'yes' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The draft genome sequence of Streptomyces kaniharaensis Shomura and Niida (BioProject number PRJNA574488 ) has been deposited in GenBank under the accession number WBOF00000000 .”
GenBank is named as the repository holding the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The draft genome sequence of Streptomyces kaniharaensis Shomura and Niida (BioProject number PRJNA574488 ) has been deposited in GenBank under the accession number WBOF00000000 .”
The dataset identifier appears only in the body text, not in a reference list entry. [majority verdict 'partial' (3/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Data availability. The draft genome sequence of Streptomyces kaniharaensis Shomura and Niida (BioProject number PRJNA574488 ) has been deposited in GenBank under the accession number WBOF00000000 . The raw reads (SRA numbers SRX7765393 and SRX77655394 ) are also available.”
The statement points to repository records with accessions. [majority verdict 'yes' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“A draft genome sequence of Streptomyces kaniharaensis was assembled from 19 polished contigs with an N 50 contig length of 6,153,183 bp.”
The dataset content is described in running prose rather than an itemised inventory. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The draft genome sequence of Streptomyces kaniharaensis Shomura and Niida (BioProject number PRJNA574488 ) has been deposited in GenBank under the accession number WBOF00000000 .”
The data are stated to be deposited in a public repository with no precondition. [majority verdict 'yes' (3/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The raw reads (SRA numbers SRX7765393 and SRX77655394) are also available.”— not found in the paper; verdict downgraded
The paper describes an access action (data are available in GenBank and SRA) but does not explicitly label the access level using standard vocabulary. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
No gatekeeper is mentioned because the data are not sensitive human-subject data.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No persistence commitment or availability timing is stated. [majority verdict 'no' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is explicitly named. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“Putative biosynthetic gene clusters (BGCs) were identified using PATRIC database tools ( https://www.patricbrc.org/ ) ( 4 ) by searching the proteome (PATRIC identification number 212423.6) for ForH homologs (PDB number 6NKO ) ( 5 ).”
The paper includes identifiers for the PDB and PATRIC resources used in the analysis.
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license is stated for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the data snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
No custom code is mentioned or located.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Funding for this work was provided by Cardiff University, the BBSRC (BB/P018017/1 to N.G.J.R.), and the NIH (R01GM129793 to V.D.C.-L.).”
The paper includes award numbers for the funding.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Genomic DNA extraction was performed using a PureLink genomic DNA minikit (Thermo Fisher, UK) following the protocol for Gram-positive bacteria.”
The paper names specific instruments and kits used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is mentioned, and no variable-definition table appears inside the article. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.269
From this paper's citation signal
Citation Network Contribution
0.0920
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 2 citers.
HHS | National Institutes of Health
Grant: R01GM129793
UKRI | Biotechnology and Biological Sciences Research Council
Grant: BB/P018017/1
Computational Studies of AEGIS Molecular Components
National Institutes of Health
Grant: 5R01GM129793-03
Pyridoxal 5'-phosphate homeostasis in Escherichia coli
FWCI
0.30
Citation Percentile
0.5%
Citation Trend
Fields of Study
Keywords