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Evaluation of V3–V4 and FL-16S rRNA amplicon sequencing approach for microbiota community analysis of tracheostomy aspirates

mSphere(2025)10.1128/msphere.00388-25Source: DataRank Database

Evaluation of V3–V4 and FL-16S rRNA amplicon sequencing approach for microbiota community analysis of tracheostomy aspirates is a research paper published in mSphere (2025). On theSindex it has a DataRank of 0. It has been cited 6 times.

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0DataRank · unranked

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Open Access6 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (5 grants)Impact (FWCI 4.48)OA: goldTopics (40)IDs (PubMed, PMC, OpenAlex)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Vaughn S. Cooper ORCID,Anna C. Zemke ORCID,Ankit Gupta ORCID

Live enrichment

PubMed:40693760 PMC:PMC12379586 OpenAlex:https://openalex.org/W4412572410

National Heart, Lung, and Blood Institute

Grant: RO1 HL162964

National Institute of Allergy and Infectious Diseases

Grant: U19AI158076

Pennsylvania Department of Health

Grant: PA CURES Grant #4100085725

NIH HHS

Grant: S10 OD028483

NHLBI NIH HHS

Grant: R01 HL162964

FWCI

4.48

Citation Percentile

1.0%

Citation Trend

2025

2026

goldLicense: cc-by

journalhttps://doi.org/10.1128/msphere.00388-25

publisherhttps://doi.org/10.1128/msphere.00388-25

publisherhttps://journals.asm.org/doi/pdf/10.1128/msphere.00388-25

repositoryhttps://pubmed.ncbi.nlm.nih.gov/40693760

repositoryhttps://doaj.org/article/8c0666ee78634b929a4c58332d375f5c

Fields of Study

Tracheal and airway disordersGut microbiota and healthNosocomial Infections in ICUTracheostomyRNA, Ribosomal, 16SHumansMicrobiotaTracheaBacteriaComputational BiologyDNA, BacterialSequence Analysis, DNAHigh-Throughput Nucleotide Sequencing

MeSH Terms

BacteriaDNA, BacterialHumansRNA, Ribosomal, 16STracheaTracheostomySequence Analysis, DNAComputational BiologyHigh-Throughput Nucleotide SequencingMicrobiota

Keywords

AmpliconAmplicon sequencingMicrobiomeBiologyComputational biologyDNA sequencingMetagenomics16S ribosomal RNAPrevotellaDeep sequencingGeneticsPolymerase chain reactionGenomeGeneBacteriaTracheostomyFull-length 16S