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EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

BMC Bioinformatics(2021)10.1186/s12859-021-04480-2Source: DataRank Database

EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality is a research paper published in BMC Bioinformatics (2021). On theSindex it has a DataRank of 0.208. It has been cited 3 times.

N/A

0.208DataRank · unranked

Scored on demand from live citation data

Open Access3 citations

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Linked data & code

bioproject gen gca igsr

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (6 grants)Impact (FWCI 0.15)OA: goldTopics (44)Linked Datasets (6)DataCite Reuse (6)IDs (PubMed, PMC, OpenAlex)Annotations (4)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.208

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

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Authors (2)

Kelvin H. Lee ORCID,Madolyn L. MacDonald ORCID

Live enrichment

PubMed:34837948 PMC:PMC8627028 OpenAlex:https://openalex.org/W3215571427

National Science Foundation

Grant: 1144726

IGERT: Systems Biology of Cells in Engineered Environments (SBE2)

National Science Foundation

Grant: 1412365

A Platform for the CHO Biomanufacturing Systems Biology Community

National Science Foundation

Grant: 1736123

RII Track-2 FEC: Advanced Biomanufacturing: Catalyzing Improved Host Development and High Quality Medicines through Genome to Phenome Predictions

National Institutes of Health

Grant: GM103446

NIGMS NIH HHS

Grant: P20 GM103446

National Institutes of Health

Grant: 5P20GM103446-15

Bioinformatics Core

FWCI

0.15

Citation Percentile

0.5%

Citation Trend

2023

2025

goldLicense: cc-by

journalhttps://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04480-2

publisherhttps://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04480-2

publisherhttps://link.springer.com/content/pdf/10.1186/s12859-021-04480-2.pdf

publisherhttps://link.springer.com/article/10.1186/s12859-021-04480-2/fulltext.html

journalhttps://doi.org/10.1186/s12859-021-04480-2

Fields of Study

Genomics and Phylogenetic StudiesBacteriophages and microbial interactionsRNA and protein synthesis mechanisms0301 basic medicine0206 medical engineering02 engineering and technology03 medical and health sciences

MeSH Terms

Machine LearningAnimalsHumansSoftwareGenome, BacterialSequence Analysis, DNAGenomicsHigh-Throughput Nucleotide Sequencing

Keywords

GenomeComputer scienceReference genomeSequence assemblyRandom forestGenome projectArtificial intelligenceQuality (philosophy)Machine learningData miningComputational biologyBiologyGeneticsGeneCHO cellsChinese hamsterGenome AssemblyGenome Assembly QualityQH301-705.5Computer applications to medicine. Medical informaticsR858-859.7High-Throughput Nucleotide SequencingGenomicsSequence Analysis, DNAAnimalsHumansBiology (General)Genome, BacterialSoftware

Sustainable Development Goals

SDG 0: Life in Land

Additional file 1 of EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

10.6084/m9.figshare.17088232.v1figshare

Additional file 1 of EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

10.6084/m9.figshare.17088232figshare

Additional file 2 of EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

10.6084/m9.figshare.17088235.v1figshare

Additional file 2 of EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

10.6084/m9.figshare.17088235figshare

EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

10.6084/m9.figshare.c.5726302.v1figshare

EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

10.6084/m9.figshare.c.5726302figshare

EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality

FAIR Checklist

DataRank Breakdown

Authors (2)

Funding (6 grants)

Impact

Open Access

Topics

Linked Datasets (6)

Annotations (Europe PMC)