Pilot corpus: NIH-funded biomedical datasets. Any DOI can be scored on demand — network effects sharpen as coverage grows.

Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing

BMC Bioinformatics(2022)10.1186/s12859-021-04547-0Source: DataRank Database

Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing is a research paper published in BMC Bioinformatics (2022). On theSindex it has a DataRank of 0. It has been cited 9 times.

N/A

0DataRank · unranked

Scored on demand from live citation data

Open Access9 citations

Download PDF

Cite:

Linked data & code

gen

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (1 grants)OA: goldTopics (56)Linked Datasets (2)DataCite Reuse (2)IDs (PubMed, PMC, OpenAlex)Annotations (1)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (1/2)

Open Access

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

FAIR checklist signals are shown for context only and do not affect DataRank scoring.

Run a calibrated FAIR evaluation for this paper →

We only score data papers we can read in full — never from an abstract alone.

Authors (6)

Pranjal Jain,Ashraf Mahgoub,Zihan Zhou ORCID,Kanak Mahadik ORCID,Somali Chaterji ORCID

Live enrichment

PubMed:34991450 PMC:PMC8734100 OpenAlex:https://openalex.org/W4206667478

National Institutes of Health

Grant: 5R01AI123037-02

Continued Development and Maintenance of the MG-RAST Metagenomics Pipeline

goldLicense: cc-by

journalhttps://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04547-0

publisherhttps://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04547-0

publisherhttps://link.springer.com/content/pdf/10.1186/s12859-021-04547-0.pdf

publisherhttps://link.springer.com/article/10.1186/s12859-021-04547-0/fulltext.html

journalhttps://doi.org/10.1186/s12859-021-04547-0

Fields of Study

Genomics and Phylogenetic StudiesGenomics and Rare DiseasesSoftware Testing and Debugging Techniques0206 medical engineering02 engineering and technologyAlgorithmsBase SequenceGenomicsHigh-Throughput Nucleotide SequencingSequence Analysis, DNASoftware

MeSH Terms

AlgorithmsBase SequenceSoftwareSequence Analysis, DNAGenomicsHigh-Throughput Nucleotide Sequencing

Keywords

PerplexityComputer scienceReference genomeGenomeMetric (unit)Error detection and correctionk-merWord error rateData miningAlgorithmArtificial intelligenceLanguage modelBiologyGeneticsError correctionNatural Language Processing (Nlp)Automated Configuration TuningNanopore ReadsPacbio ReadsParameter Search SpacePerplexity MetricTransformer NetworksGenomics (q-bio.GN)FOS: Computer and information sciencesComputer Science - Machine LearningBase SequenceQH301-705.5Methodology ArticleComputer applications to medicine. Medical informaticsR858-859.7High-Throughput Nucleotide SequencingGenomicsSequence Analysis, DNAMachine Learning (cs.LG)FOS: Biological sciencesQuantitative Biology - GenomicsBiology (General)AlgorithmsSoftware

Additional file 1 of CARE 2.0: reducing false-positive sequencing error corrections using machine learning

10.6084/m9.figshare.20063884.v1figshare

Additional file 1 of CARE 2.0: reducing false-positive sequencing error corrections using machine learning

10.6084/m9.figshare.20063884figshare

Lerna: transformer architectures for configuring error correction tools for short- and long-read genome sequencing

FAIR Checklist

Authors (6)

Funding (1 grants)

Open Access

Topics

Linked Datasets (2)

Annotations (Europe PMC)