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Specific splice junction detection in single cells with SICILIAN

Genome Biology(2021)10.1186/s13059-021-02434-8Source: DataRank Database

Specific splice junction detection in single cells with SICILIAN is a research paper published in Genome Biology (2021). On theSindex it has a DataRank of 0.477. It has been cited 23 times.

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0.477DataRank · unranked

Scored on demand from live citation data

23 citations

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Linked data & code

geo arrayexpress ega doi

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (14 grants)Impact (FWCI 1.48)OA: goldTopics (37)Linked Datasets (10)DataCite Reuse (10)IDs (PubMed, PMC, OpenAlex)Annotations (4)

FAIR Checklist

Context only (not used in score)

Findable (2/2)

Has DOI
Indexed in repositories

Accessible (0/2)

Interoperable (2/2)

DataCite relations
Linked datasets

Reusable (0/3)

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DataRank Breakdown

Base Score 100%Citation Network 0%

Base Score Contribution

0.477

From this paper's citation signal

Citation Network Contribution

Citation network not refreshed for this result

This paper's DataRank is currently driven only by its base citation score. Citation network data was not refreshed for this result.

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Authors (4)

Julia Eve Olivieri,Ana Damljanovic,Julia Salzman ORCID,Roozbeh Dehghannasiri ORCID

Live enrichment

PubMed:34353340 PMC:PMC8339681 OpenAlex:https://openalex.org/W3189355494

National Science Foundation

Grant: DGE-1656518

National Cancer Institute

Grant: R25 CA180993

NIGMS NIH HHS

Grant: R35 GM139517

U.S. National Library of Medicine

Grant: T15 LM7033-36

National Institute of General Medical Sciences

Grant: R01 GM116847

NLM NIH HHS

Grant: T15 LM007033

National Science Foundation

Grant: MCB1552196

National Science Foundation

Grant: 1552196

CAREER: Dissecting the Biogenesis and Function of Circular RNA in Simple Eukaryotes

National Institutes of Health

Grant: 5R01GM116847-05

Unbiased discovery of mechanisms regulating circRNA

National Institutes of Health

Grant: 5R25CA180993-02

Cancer Systems Biology Scholars Program

National Institutes of Health

Grant: 5T15LM007033-36

Biomedical Informatics Training at Stanford

Alfred P. Sloan Foundation

McCormick Foundation

Baxter International Foundation

FWCI

1.48

Citation Percentile

0.8%

Citation Trend

2021

2022

2023

2024

2025

2026

goldLicense: cc-by

journalhttps://genomebiology.biomedcentral.com/track/pdf/10.1186/s13059-021-02434-8

publisherhttps://genomebiology.biomedcentral.com/track/pdf/10.1186/s13059-021-02434-8

journalhttps://doi.org/10.1186/s13059-021-02434-8

repositoryhttps://pubmed.ncbi.nlm.nih.gov/34353340

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/8339681

Fields of Study

Single-cell and spatial transcriptomicsRNA Research and SplicingMolecular Biology Techniques and Applications0301 basic medicine0303 health sciences03 medical and health sciences

MeSH Terms

AlgorithmsAnimalsHumansRNA SplicingAlternative SplicingSequence Analysis, RNAEntropyComputational BiologyMiceSingle-Cell Analysis

Keywords

spliceComputational biologyBiologySicilianAlternative splicingRNA splicingGeneticsComputer scienceGeneExonQH301-705.5Sequence Analysis, RNAEntropyShort ReportQH426-470MiceAnimalsHumansBiology (General)Single-Cell AnalysisAlgorithms

Additional file 1 of Specific splice junction detection in single cells with SICILIAN

10.6084/m9.figshare.15122242.v1figshare

Additional file 1 of Specific splice junction detection in single cells with SICILIAN

10.6084/m9.figshare.15122242figshare

Additional file 2 of Specific splice junction detection in single cells with SICILIAN

10.6084/m9.figshare.15122245.v1figshare

Additional file 2 of Specific splice junction detection in single cells with SICILIAN

10.6084/m9.figshare.15122245figshare

Additional file 1 of Mining alternative splicing patterns in scRNA-seq data using scASfind

10.6084/m9.figshare.26401787.v1figshare

Additional file 1 of Mining alternative splicing patterns in scRNA-seq data using scASfind

10.6084/m9.figshare.26401787figshare

Additional file 2 of Mining alternative splicing patterns in scRNA-seq data using scASfind

10.6084/m9.figshare.26402007.v1figshare

Additional file 2 of Mining alternative splicing patterns in scRNA-seq data using scASfind

10.6084/m9.figshare.26402007figshare

Specific splice junction detection in single cells with SICILIAN

10.6084/m9.figshare.c.5546776figshare

Specific splice junction detection in single cells with SICILIAN

10.6084/m9.figshare.c.5546776.v1figshare

Specific splice junction detection in single cells with SICILIAN

FAIR Checklist

DataRank Breakdown

Authors (4)

Funding (14 grants)

Impact

Open Access

Topics

Linked Datasets (10)

Annotations (Europe PMC)