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MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

Genome biology(2024)10.1186/s13059-024-03412-6Source: DataRank Database

MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge is a research paper published in Genome biology (2024). On theSindex it has a DataRank of 0.

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Linked data & code

bioproject gen refseq igsr

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (4 grants)Impact (FWCI 0.00)OA: goldTopics (45)Linked Datasets (16)DataCite Reuse (16)IDs (PubMed, PMC, OpenAlex)Annotations (4)

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Context only (not used in score)

Findable (2/2)

Has DOI
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Accessible (1/2)

Open Access

Interoperable (2/2)

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Reusable (0/3)

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Authors (13)

Rayo Suseno,Kerry Kizer,Jacqueline P. Williams ORCID,Juliano André Boquett ORCID,Stacy J. Caillier ORCID

Live enrichment

PubMed:39420419 PMC:PMC11484429 OpenAlex:https://openalex.org/W4403508986

NIAID NIH HHS

Grant: U01 AI090905

NINDS NIH HHS

Grant: R35 NS111644

National Institutes of Health

Grant: 1U01AI090905-01

Insights into immune-related disease born from population genomics

National Institutes of Health

Grant: 5R01AI128775-11

Integrated Exchange and Storage of Current- and Future-Generation Immunogenomic Data

FWCI

0.00

Citation Percentile

0.1%

goldLicense: cc-by

journalhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03412-6

publisherhttps://genomebiology.biomedcentral.com/counter/pdf/10.1186/s13059-024-03412-6

publisherhttps://link.springer.com/content/pdf/10.1186/s13059-024-03412-6.pdf

publisherhttps://link.springer.com/article/10.1186/s13059-024-03412-6/fulltext.html

journalhttps://doi.org/10.1186/s13059-024-03412-6

Fields of Study

T-cell and B-cell Immunologyvaccines and immunoinformatics approachesImmune Cell Function and Interaction0206 medical engineering02 engineering and technologyHaplotypesHumansMajor Histocompatibility ComplexSoftwareHigh-Throughput Nucleotide SequencingAlgorithms

MeSH Terms

AlgorithmsHaplotypesHumansMajor Histocompatibility ComplexSoftwareHigh-Throughput Nucleotide Sequencing

Keywords

BiologyHaplotypeHuman geneticsGenome BiologyThroughputMajor histocompatibility complexComputational biologyGeneticsEvolutionary biologyGenomicsGeneGenomeAlleleComputer scienceDe Novo AssemblyShort-read SequencingHuman Leukocyte Antigen Genes570QH301-705.5High-Throughput Nucleotide SequencingQH426-470ArticleHaplotypes616HumansBiology (General)SoftwareAlgorithms

Additional file 5 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253476.v1figshare

Additional file 5 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253476figshare

Additional file 6 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253479.v1figshare

Additional file 6 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253479figshare

Additional file 8 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253485.v1figshare

Additional file 8 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253485figshare

Additional file 7 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253482.v1figshare

Additional file 7 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253482figshare

Additional file 1 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253464figshare

Additional file 4 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253473figshare

Additional file 4 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253473.v1figshare

Additional file 2 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253467figshare

Additional file 3 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253470.v1figshare

Additional file 3 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253470figshare

Additional file 2 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253467.v1figshare

Additional file 1 of MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

10.6084/m9.figshare.27253464.v1figshare

MHConstructor: a high-throughput, haplotype-informed solution to the MHC assembly challenge

FAIR Checklist

Authors (13)

Funding (4 grants)

Impact

Open Access

Topics

Linked Datasets (16)

Annotations (Europe PMC)