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Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)

F1000Research(2023)10.12688/f1000research.128982.1Source: DataRank Database

Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE) is a research paper published in F1000Research (2023). On theSindex it has a DataRank of 0. It has been cited 2 times.

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Scored on demand from live citation data

Open Access2 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)Impact (FWCI 0.86)OA: goldTopics (38)IDs (PubMed, PMC, OpenAlex)Annotations (1)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (3)

Anand K Rampadarath ORCID,David P Nickerson ORCID,Yuda Munarko ORCID

Live enrichment

PubMed:37842339 PMC:PMC10570691 OpenAlex:https://openalex.org/W4319986602

National Institutes of Health

Grant: P41GM109824

National Institutes of Health

Grant: 3P41GM109824-09S1

Equipment supplement for NCDIR

Aotearoa Foundation

Auckland Bioengineering Institute

FWCI

0.86

Citation Percentile

0.8%

Citation Trend

2024

goldLicense: cc-by

journalhttp://dx.doi.org/10.12688/f1000research.128982.1

publisherhttp://dx.doi.org/10.12688/f1000research.128982.1

publisherhttps://f1000research.com/articles/12-162/v1/xml

publisherhttps://f1000research.com/articles/12-162/v1/pdf

publisherhttps://f1000research.com/articles/12-162/v1/iparadigms

Fields of Study

Scientific Computing and Data ManagementGene Regulatory Network AnalysisBioinformatics and Genomic Networks0301 basic medicine0303 health sciences03 medical and health sciencesSearch EngineComputer SimulationInformation Storage and RetrievalNatural Language Processing

MeSH Terms

Computer SimulationNatural Language ProcessingInformation Storage and RetrievalSearch Engine

Keywords

Computer scienceInformation retrievalOntologyTransformerSentenceSBMLLanguage modelSearch engineReuseContext (archaeology)Data miningNatural language processingMarkup languageXMLWorld Wide WebSemantic AnnotationPhysiome Model RepositoryBertCasbertComposite AnnotationBiosimulation Model Search EngineSoftware Tool ArticleInformation Storage and RetrievalComputer Simulation

Sustainable Development Goals

SDG 0: Quality Education

Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)

FAIR Checklist

Authors (3)

Funding (4 grants)

Impact

Open Access

Topics

Annotations (Europe PMC)