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Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironment

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012031Source: DataRank Database

Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironment is a research paper published in PLoS Computational Biology (2024). On theSindex it has a DataRank of 0. It has been cited 13 times.

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Open Access13 citations

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datarank_citation_only_1hop_v6· scope data_onlyMethodology

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Enrichment:Funding (4 grants)Impact (FWCI 2.08)OA: goldTopics (41)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (5)

Mohammad Mazharul Islam ORCID,Shayn M. Peirce ORCID,Jason A. Papin ORCID,Roseanne M. Ford ORCID,Tracy Kuper ORCID

Live enrichment

PubMed:38669236 PMC:PMC11051585 OpenAlex:https://openalex.org/W4395683097

National Institute of Allergy and Infectious Diseases

Grant: R01 AI154242

National Institutes of Health

Grant: T32GM136615

National Institutes of Health

Grant: 5R01AI154242-04

Multi-scale model of microbial phenotype modulation by mucins

National Institutes of Health

Grant: 2T32GM136615-06

Biotechnology for Human Health

FWCI

2.08

Citation Percentile

0.9%

Citation Trend

2024

2025

2026

goldLicense: cc-by

journalhttps://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012031&type=printable

publisherhttps://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1012031&type=printable

publisherhttps://dx.plos.org/10.1371/journal.pcbi.1012031

journalhttps://doi.org/10.1371/journal.pcbi.1012031

repositoryhttps://pubmed.ncbi.nlm.nih.gov/38669236

Fields of Study

Microbial Metabolic Engineering and BioproductionGene Regulatory Network AnalysisBioinformatics and Genomic Networks0301 basic medicine03 medical and health sciences

MeSH Terms

Computer SimulationModels, BiologicalNitric OxidePseudomonas aeruginosaOxidative StressBiofilmsComputational BiologyMetabolic Networks and PathwaysDenitrificationTranscriptome

Keywords

BiofilmFlux balance analysisMetabolic networkMetabolomicsDenitrificationMetabolic pathwayChemistryOxidative stressTranscriptomeBiologyMetabolismBiological systemComputational biologyBiochemistryBioinformaticsBacteriaGeneticsQH301-705.5Nitric OxideModels, BiologicalBiofilmsPseudomonas aeruginosaComputer SimulationBiology (General)Metabolic Networks and PathwaysResearch Article

Sustainable Development Goals

SDG 0: Clean water and sanitation