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Tissue specificity-aware TWAS (TSA-TWAS) framework identifies novel associations with metabolic, immunologic, and virologic traits in HIV-positive adults

PLoS Genetics(2021)10.1371/journal.pgen.1009464Source: DataRank Database

Tissue specificity-aware TWAS (TSA-TWAS) framework identifies novel associations with metabolic, immunologic, and virologic traits in HIV-positive adults is a research paper published in PLoS Genetics (2021). On theSindex it has a DataRank of 0.812. It has been cited 17 times, with 15 citing works in its 1-hop citation network.

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0.812DataRank · unranked

Scored on demand from live citation data

Deposits data Open Access17 citations · 15 citing works in its network

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Data availability

Repositories this paper deposited data in (declared in PubMed).

ClinicalTrials.govNCT00000919 NCT00013520 NCT00050895 NCT00118898 NCT00811954

DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?

›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (190 grants)Impact (FWCI 2.12)OA: goldTopics (27)IDs (PubMed, PMC, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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DataRank Breakdown

Base Score 53%Citation Network 47%

Base Score Contribution

0.434

From this paper's citation signal

Citation Network Contribution

0.378

From 14 citing papers with measurable signal

Learn more about DataRank methodology →

Top 5 citers driving the network score

Ranked by each citer's contribution to N(p) — log1p(C_q) divided by its reference count — out of 15 citers.

webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study
Nucleic Acids Research2021366 citations51 referencesContributes 0.116
Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens
Science2023207 citations127 referencesContributes 0.042
MiXcan: a framework for cell-type-aware transcriptome-wide association studies with an application to breast cancer
Nature Communications202319 citations72 referencesContributes 0.042
The integration of genome-wide and transcriptome-wide association studies in neurodegenerative diseases: opportunities, challenges, and current methodological innovations
Briefings in Bioinformatics20255 citations52 referencesContributes 0.034
A flexible empirical Bayes approach to multivariate multiple regression, and its improved accuracy in predicting multi-tissue gene expression from genotypes
PLoS Genetics20238 citations67 referencesContributes 0.033

Authors (11)

Yogasudha Veturi ORCID,Anurag Verma ORCID,Yuki Bradford,Eric S. Daar ORCID,Roy M. Gulick ORCID

Live enrichment

PubMed:33901188 PMC:PMC8102009 OpenAlex:https://openalex.org/W3159453832

National Center for Advancing Translational Sciences

Grant: TR000124

National Institute of Allergy and Infectious Diseases

Grant: AI077505

National Center for Advancing Translational Sciences

Grant: TR000445

National Institute of Allergy and Infectious Diseases

Grant: AI069439

National Institute of Allergy and Infectious Diseases

Grant: AI116794

National Institutes of Health

Grant: A1069412

National Institutes of Health

Grant: A1069423

National Institutes of Health

Grant: A1069424

National Institutes of Health

Grant: A1069503

National Institutes of Health

Grant: AI025859

National Institutes of Health

Grant: AI025868

National Institutes of Health

Grant: AI027658

National Institutes of Health

Grant: AI027661

National Institutes of Health

Grant: AI027666

National Institutes of Health

Grant: AI027675

National Institutes of Health

Grant: AI032782

National Institutes of Health

Grant: AI034853

National Institutes of Health

Grant: AI038858

National Institutes of Health

Grant: AI045008

National Institutes of Health

Grant: AI046370

National Institutes of Health

Grant: AI046376

National Institutes of Health

Grant: AI050409

National Institutes of Health

Grant: AI050410

National Institutes of Health

Grant: AI058740

National Institutes of Health

Grant: AI060354

National Institutes of Health

Grant: AI068636

National Institutes of Health

Grant: AI069412

National Institutes of Health

Grant: AI069415

National Institutes of Health

Grant: AI069418

National Institutes of Health

Grant: AI069419

National Institutes of Health

Grant: AI069423

National Institutes of Health

Grant: AI069424

National Institutes of Health

Grant: AI069428

National Institutes of Health

Grant: AI069432

National Institutes of Health

Grant: AI069434

National Institutes of Health

Grant: AI069447

National Institutes of Health

Grant: AI069450

National Institutes of Health

Grant: AI069452

National Institutes of Health

Grant: AI069465

National Institutes of Health

Grant: AI069467

National Institutes of Health

Grant: AI069470

National Institutes of Health

Grant: AI069471

National Institutes of Health

Grant: AI069472

National Institutes of Health

Grant: AI069474

National Institutes of Health

Grant: AI069477

National Institutes of Health

Grant: AI069481

National Institutes of Health

Grant: AI069484

National Institutes of Health

Grant: AI069494

National Institutes of Health

Grant: AI069495

National Institutes of Health

Grant: AI069496

National Institutes of Health

Grant: AI069501

National Institutes of Health

Grant: AI069502

National Institutes of Health

Grant: AI069503

National Institutes of Health

Grant: AI069511

National Institutes of Health

Grant: AI069513

National Institutes of Health

Grant: AI069532

National Institutes of Health

Grant: AI069534

National Institutes of Health

Grant: AI069556

National Institutes of Health

Grant: AI072626

National Institutes of Health

Grant: AI073961

National Institutes of Health

Grant: RR000046

National Institutes of Health

Grant: RR000425

National Institutes of Health

Grant: RR023561

National Institutes of Health

Grant: RR024156

National Institutes of Health

Grant: RR024160

National Institutes of Health

Grant: RR024996

National Institutes of Health

Grant: RR025008

National Institutes of Health

Grant: RR025747

National Institutes of Health

Grant: RR025777

National Institutes of Health

Grant: RR025780

National Institutes of Health

Grant: TR000004

National Institutes of Health

Grant: TR000058

National Institutes of Health

Grant: TR000170

National Institutes of Health

Grant: TR000439

National Institutes of Health

Grant: TR000457

National Institutes of Health

Grant: TR001079

National Institutes of Health

Grant: TR001082

National Institutes of Health

Grant: TR001111

National Institutes of Health

Grant: TR024160

NIAID NIH HHS

Grant: P30 AI050409

NIAID NIH HHS

Grant: R01 AI116794

NIAID NIH HHS

Grant: U01 AI046370

NCRR NIH HHS

Grant: UL1 RR024996

NCRR NIH HHS

Grant: UL1 RR025777

NIAID NIH HHS

Grant: UM1 AI069415

NIAID NIH HHS

Grant: UM1 AI069447

NIAID NIH HHS

Grant: UM1 AI069534

NIAID NIH HHS

Grant: P30 AI050410

NIAID NIH HHS

Grant: U01 AI027661

NIAID NIH HHS

Grant: U01 AI034853

NIAID NIH HHS

Grant: U01 AI046376

NIAID NIH HHS

Grant: U01 AI069467

NIAID NIH HHS

Grant: U01 AI069496

NIAID NIH HHS

Grant: U01 AI069503

NCATS NIH HHS

Grant: UL1 TR000058

NCATS NIH HHS

Grant: UL1 TR000124

NCATS NIH HHS

Grant: UL1 TR000170

NCATS NIH HHS

Grant: UL1 TR001881

NIAID NIH HHS

Grant: UM1 AI069419

NIAID NIH HHS

Grant: UM1 AI069434

NIAID NIH HHS

Grant: UM1 AI069452

NIAID NIH HHS

Grant: UM1 AI069474

NIAID NIH HHS

Grant: UM1 AI069484

NIAID NIH HHS

Grant: U01 AI027658

NIAID NIH HHS

Grant: U01 AI027675

NIAID NIH HHS

Grant: U01 AI038858

NIAID NIH HHS

Grant: U01 AI069424

NIAID NIH HHS

Grant: U01 AI069471

NCRR NIH HHS

Grant: UL1 RR024156

NCATS NIH HHS

Grant: UL1 TR001079

NCATS NIH HHS

Grant: UL1 TR001111

NIAID NIH HHS

Grant: UM1 AI069424

NIAID NIH HHS

Grant: UM1 AI069481

NIAID NIH HHS

Grant: UM1 AI069496

NCRR NIH HHS

Grant: M01 RR000046

NCRR NIH HHS

Grant: M01 RR000425

NIAID NIH HHS

Grant: P30 AI045008

NIAID NIH HHS

Grant: U01 AI025868

NIAID NIH HHS

Grant: U01 AI069415

NIAID NIH HHS

Grant: U01 AI069423

NIAID NIH HHS

Grant: U01 AI069470

NIAID NIH HHS

Grant: U01 AI069494

NCRR NIH HHS

Grant: UL1 RR025780

NCATS NIH HHS

Grant: UL1 TR000457

NIAID NIH HHS

Grant: UM1 AI068636

NIAID NIH HHS

Grant: UM1 AI069465

NIAID NIH HHS

Grant: UM1 AI069472

NIAID NIH HHS

Grant: P30 AI073961

NIAID NIH HHS

Grant: R01 AI077505

NIAID NIH HHS

Grant: U01 AI069418

NIAID NIH HHS

Grant: U01 AI069432

NIAID NIH HHS

Grant: U01 AI069439

NIAID NIH HHS

Grant: U01 AI069447

NIAID NIH HHS

Grant: U01 AI069465

NIAID NIH HHS

Grant: U01 AI069474

NIAID NIH HHS

Grant: U01 AI069513

NCRR NIH HHS

Grant: UL1 RR025008

NCATS NIH HHS

Grant: UL1 TR000445

NCATS NIH HHS

Grant: UL1 TR002384

NIAID NIH HHS

Grant: UM1 AI069423

NIAID NIH HHS

Grant: UM1 AI069432

NIAID NIH HHS

Grant: UM1 AI069450

NIAID NIH HHS

Grant: UM1 AI069495

NIAID NIH HHS

Grant: UM1 AI069502

NIAID NIH HHS

Grant: U01 AI027666

NIAID NIH HHS

Grant: U01 AI068636

NIAID NIH HHS

Grant: U01 AI069428

NIAID NIH HHS

Grant: U01 AI069434

NIAID NIH HHS

Grant: U01 AI069450

NIAID NIH HHS

Grant: U01 AI069452

NIAID NIH HHS

Grant: U01 AI069472

NIAID NIH HHS

Grant: U01 AI069481

NIAID NIH HHS

Grant: U01 AI069484

NIAID NIH HHS

Grant: U01 AI069501

NIAID NIH HHS

Grant: U01 AI069532

NIAID NIH HHS

Grant: U01 AI069556

NCRR NIH HHS

Grant: UL1 RR024160

NCATS NIH HHS

Grant: UL1 TR000004

NCATS NIH HHS

Grant: UL1 TR001082

NCATS NIH HHS

Grant: UL1 TR002548

NIAID NIH HHS

Grant: UM1 AI069418

NIAID NIH HHS

Grant: UM1 AI069470

NIAID NIH HHS

Grant: UM1 AI069477

NIAID NIH HHS

Grant: UM1 AI069494

NIAID NIH HHS

Grant: UM1 AI069511

NIAID NIH HHS

Grant: UM1 AI069532

NIAID NIH HHS

Grant: R01 AI058740

NIAID NIH HHS

Grant: U01 AI069477

NIAID NIH HHS

Grant: U01 AI069495

NIAID NIH HHS

Grant: U01 AI069502

NIAID NIH HHS

Grant: U01 AI069511

NIAID NIH HHS

Grant: U01 AI069534

NCRR NIH HHS

Grant: UL1 RR025747

NIAID NIH HHS

Grant: UM1 AI069412

NIAID NIH HHS

Grant: UM1 AI069428

NIAID NIH HHS

Grant: UM1 AI069439

NIAID NIH HHS

Grant: UM1 AI069467

NIAID NIH HHS

Grant: UM1 AI069503

NIAID NIH HHS

Grant: P30 AI060354

NIAID NIH HHS

Grant: U01 AI025859

NIAID NIH HHS

Grant: U01 AI032782

NIAID NIH HHS

Grant: U01 AI069412

NIAID NIH HHS

Grant: U01 AI069419

NCATS NIH HHS

Grant: UL1 TR000439

NIAID NIH HHS

Grant: UM1 AI069471

NIAID NIH HHS

Grant: UM1 AI069501

NIAID NIH HHS

Grant: UM1 AI069513

NIAID NIH HHS

Grant: UM1 AI069556

Wellcome Trust

FWCI

2.12

Citation Percentile

0.9%

Citation Trend

2021

2022

2023

2024

2025

goldLicense: cc-by

journalhttps://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1009464&type=printable

publisherhttps://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1009464&type=printable

publisherhttps://dx.plos.org/10.1371/journal.pgen.1009464

journalhttps://doi.org/10.1371/journal.pgen.1009464

repositoryhttps://pubmed.ncbi.nlm.nih.gov/33901188

Fields of Study

Genetic Associations and EpidemiologyRNA modifications and cancerHIV-related health complications and treatmentsComputer SimulationGene Expression RegulationGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansOrgan SpecificityPolymorphism, Single NucleotideQuantitative Trait LociTranscriptome

MeSH Terms

Computer SimulationGene Expression RegulationHumansOrgan SpecificityGenetic Predisposition to DiseasePolymorphism, Single NucleotideQuantitative Trait LociGenome-Wide Association StudyTranscriptome

Keywords

BiologyStatistical powerGeneComputational biologyTraitGenetics

Sustainable Development Goals

SDG 0: Good health and well-being