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Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

PLoS ONE(2020)10.1371/journal.pone.0229326Source: DataRank Database

Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak is a research paper published in PLoS ONE (2020). On theSindex it has a DataRank of 0. It has been cited 2 times.

N/A

0DataRank · unranked

Scored on demand from live citation data

Open Access2 citations

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›Methodology & internals

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Pipeline:MetadataData-paper checkEnrichmentCitation networkScoring

Enrichment:Funding (4 grants)Impact (FWCI 0.14)OA: goldTopics (60)IDs (PubMed, OpenAlex)SDGs (1)

FAIR Checklist

Context only (not used in score)

Findable (1/2)

Has DOI

Accessible (1/2)

Open Access

Interoperable (0/2)

Reusable (0/3)

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Authors (13)

Anne Pohlmann ORCID,Clara Amid ORCID,Theo M. Bestebroer,Sharon M. Brookes ORCID,Ian H. Brown ORCID

Live enrichment

PubMed:32078666 OpenAlex:https://openalex.org/W3007191987

Horizon 2020

Grant: 643476

COllaborative Management Platform for detection and Analyses of (Re-)emerging and foodborne outbreaks in Europe

Horizon 2020

Grant: 653316

European Virus Archive goes global

NIAID/NIH

Grant: HHSN272201400008C

European Commission

Grant: 871029

European Virus Archive GLOBAL

FWCI

0.14

Citation Percentile

0.5%

Citation Trend

2021

2024

goldLicense: cc-by

journalhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0229326&type=printable

GOLDhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0229326&type=printable

publisherhttps://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0229326&type=printable

publisherhttps://dx.plos.org/10.1371/journal.pone.0229326

journalhttps://doi.org/10.1371/journal.pone.0229326

Fields of Study

Influenza Virus Research StudiesGenomics and Phylogenetic StudiesRNA and protein synthesis mechanismsMedicineComputer ScienceEnvironmental ScienceBiology0301 basic medicine03 medical and health sciencesAnimalsDisease OutbreaksDucksGenome, ViralInfluenza A Virus, H5N8 SubtypeOrthomyxoviridae InfectionsPolymorphism, Single NucleotideRNA, ViralSequence Analysis, DNAWhole Genome Sequencing

MeSH Terms

Influenza A Virus, H5N8 SubtypeWhole Genome SequencingAnimalsDisease OutbreaksDucksOrthomyxoviridae InfectionsRNA, ViralGenome, ViralSequence Analysis, DNAPolymorphism, Single Nucleotide

Keywords

DNA sequencingShotgun sequencingMassive parallel sequencingBiologyData miningIon semiconductor sequencingStandardizationComparabilityComputational biologyRaw dataDeep sequencingComputer scienceGenomeGeneticsMathematicsWhole Genome SequencingScienceEMC OR-01QRGenome, ViralSequence Analysis, DNAPolymorphism, Single NucleotideDisease OutbreaksDucksOrthomyxoviridae InfectionsMedicineAnimalsRNA, ViralInfluenza A Virus, H5N8 SubtypeResearch Article

Sustainable Development Goals

SDG 3: 3. Good health