Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers is a dataset published in EMBO Molecular Medicine (2021). On theSindex it has a DataRank of 2.9, placing it in the top 7.5% of the data-sharing corpus. It has been cited 105 times, with 77 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 7% for downstream scientific impact
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“PXD017145”
The paper gives PRIDE accession numbers (PXD017145 and PXD017210) which are persistent identifiers in the accepted scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Proteome raw data and MaxQuant processing tables can be downloaded from the PRIDE repository”
The paper names PRIDE, a recognised data repository listed in re3data/FAIRsharing, as the holder of the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Proteome raw data and MaxQuant processing tables can be downloaded from the PRIDE repository under the accession numbers PXD017145 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017145 ) (BALF) and PXD017210 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017210 ) (plasma).”
The dataset identifiers appear only in the body text's data-availability statement, not in the reference list. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Proteome raw data and MaxQuant processing tables can be downloaded from the PRIDE repository under the accession numbers PXD017145 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017145 ) (BALF) and PXD017210 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017210 ) (plasma).”
The data-availability statement points to repository records with accessions, which is Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“We generated subsets of the whole lung parenchyma datasets for COL1A2+ stromal cells (Fig 1C and Appendix Fig S1C–E ), EPCAM+ epithelial cells (Fig 1D and Appendix Fig S1F–H ), CLDN5+ endothelial cells (Fig 1E and Appendix Fig S1I –K), and CD45+ leukocytes (Fig 1F and Appendix Fig S1L–N ).”
The dataset content is described in running prose without an itemised inventory such as a section, table, or enumerated list of files or variables. [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Proteome raw data and MaxQuant processing tables can be downloaded from the PRIDE repository under the accession numbers PXD017145 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017145 ) (BALF) and PXD017210 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017210 ) (plasma).”
The text provides a direct route to download the data via the PRIDE repository without any stated precondition like registration or embargo. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Proteome raw data and MaxQuant processing tables can be downloaded from the PRIDE repository under the accession numbers PXD017145 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017145 ) (BALF) and PXD017210 ( http://www.ebi.ac.uk/pride/archive/projects/PXD017210 ) (plasma).”
The text describes the action of downloading the data but does not apply an explicit access-level label such as 'open access' or 'freely available'. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The paper involves human-subject data but does not name any gatekeeper, institutional or personal, for data access.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence in the paper states how long the data will remain available or makes any persistence commitment.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format is named for the released data in the text.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, ontology, or checklist) is named as applied to the data.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GEO GSE124685”
The paper cites at least one identifier for a resource other than its own dataset, such as 'GEO GSE124685' for published bulk RNA-seq data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No licence is explicitly attached to the data; the CC BY 4.0 license applies only to the article.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided for the released data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Count tables of the Munich single‐cell cohort as well as all custom analysis code can be accessed at https://github.com/theislab/2020_Mayr .”
The paper provides a GitHub URL as a machine-resolvable locator for the study's own code. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“grant agreement no. 874656 (discovAIR)”
The paper includes a specific grant number (874656) from the European Union's Horizon 2020 programme. [majority verdict 'yes' (3/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“STAR (version 2.5.2a) was used for mapping (Dobin et al , 2013 ).”
The text names specific software and versions used to produce the data, such as STAR version 2.5.2a. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
No documentation object (README, data dictionary, codebook) is named as travelling with the deposited data. [majority verdict 'no' (4/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.700
From this paper's citation signal
Citation Network Contribution
2.2
From 65 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 77 citers.
EC | Cordis
Grant: 874656
FWCI
10.41
Citation Percentile
1.0%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals