PhenoMIP: High-Throughput Phenotyping of Diverse Caenorhabditis elegans Populations via Molecular Inversion Probes is a dataset published in G3 Genes Genomes Genetics (2020). On theSindex it has a DataRank of 0.338, placing it in the top 51.5% of the data-sharing corpus. It has been cited 5 times, with 2 citing works in its 1-hop citation network. Its calibrated FAIR score is 67/100.
Ranks in the top 52% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The paper provides a BioProject accession (PRJNA595923), which is a persistent identifier scheme. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The paper names the NIH Sequence Read Archive as the repository for the raw sequence data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The dataset identifier (BioProject PRJNA595923) appears only in the body text, not as a reference-list entry. [majority verdict 'partial' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The data-availability statement points to a repository with an accession, satisfying Colavizza category 3. [majority verdict 'yes' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“File SD1 contains molecular inversion probe sequences and data for all 2007 MMP strains and 40 wild isolates of the Million Mutation Project. Four candidate probes for each strain were designed and listed in this file. File SD2 contains all information used in the false positive and precision analysis of PhenoMIP. File SD3 contains all mean FCR data for each strain on each replicate in each experimental pool and summaries of each strain based on pool and treatment. File SD4 contains all wild isolate pooling information including strains pooled, fold-change rates by replicate, and ED3052 mapping interval information. File SD5 contains all read depth information for each MIP within each sequencing library separated by pool and the mean abundance of each strain within each replicate separated by pool.”— not found in the paper; verdict downgraded
The paper presents an itemized inventory of the supplementary data files, describing the content of each file. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The data are stated to be available in a public repository with no stated precondition. [majority verdict 'yes' (4/5 passes agreed)]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The paper describes the action of accessing the data at a repository but does not provide an explicit access-level label such as 'open access' or 'freely available' for the data. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject data, and no gatekeeper is named or required. [majority verdict 'no' (4/5 passes agreed)]
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“Raw sequence files for pools M1 to M11 and the wild isolate pooling are available from the NIH Sequence Read Archive bioproject PRJNA595923.”
The paper states the data are available now but does not mention any persistence commitment or retention period. [majority verdict 'partial' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
No file format token for the released data is named anywhere in the paper.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard (e.g., MIAME, MINSEQE, ontology) is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
No identifier (accession, DOI, RRID, etc.) for any resource other than the paper's own dataset occurs in the text. [majority verdict 'no' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper only states the CC BY 4.0 license for the article itself, not for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
No version token or date is provided to pin a specific snapshot of the data.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Custom scripts used to analyze sequencing data are available at GitHub ( https://github.com/camok/PhenoMIP ).”
The paper provides a machine-resolvable locator (GitHub URL) for the study's own code. [majority verdict 'yes' (4/5 passes agreed)]
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“Work by C. Mok was supported by the Canadian Institutes of Health Research MFE-135408.”
An award number (MFE-135408) is given for the funding. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Libraries were sequenced on Illumina MiSeq or NextSeq systems.”
The paper names the specific sequencing instruments (Illumina MiSeq, NextSeq) used to produce the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
The paper does not name a README, data dictionary, or codebook that travels with the data, and variable definitions are not provided in a dedicated table or appendix. [majority verdict 'no' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.269
From this paper's citation signal
Citation Network Contribution
0.0692
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 2 citers.
CIHR
Grant: MFE-135408
NIH HHS
Grant: P40 OD010440
NHGRI NIH HHS
Grant: R25 HG007153
NHGRI NIH HHS
Grant: RC2 HG005921
NHGRI NIH HHS
Grant: R21 HG007201
National Institutes of Health
Grant: 1R21HG007201-01
High throughput methods for Synthetic Genetic Array Analysis in C. elegans
National Institutes of Health
Grant: 1P40OD010440-01
Caenorhabditis Genetics Center
Canadian Institutes of Health Research
Grant: unidentified
unidentified
FWCI
0.47
Citation Percentile
0.5%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Supplemental Material for Mok et al., 2020
Supplemental Material for Mok et al., 2020
Supplemental Material for Mok et al., 2020