Chromosome-Level Assembly of the Caenorhabditis remanei Genome Reveals Conserved Patterns of Nematode Genome Organization is a dataset published in Genetics (2020). On theSindex it has a DataRank of 1.2, placing it in the top 17% of the data-sharing corpus. It has been cited 50 times, with 38 citing works in its 1-hop citation network. Its calibrated FAIR score is 71/100.
Ranks in the top 17% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“All raw sequencing data generated in this study have been submitted to the NCBI BioProject database ( https://www.ncbi.nlm.nih.gov/bioproject/ ) under accession number PRJNA577507.”
The paper provides a persistent identifier (PRJNA577507) for the raw sequencing data, which is a recognized PID scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“All raw sequencing data generated in this study have been submitted to the NCBI BioProject database”
The paper names NCBI BioProject, a recognised public repository, as the holder of the data.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“All raw sequencing data generated in this study have been submitted to the NCBI BioProject database ( https://www.ncbi.nlm.nih.gov/bioproject/ ) under accession number PRJNA577507.”
The dataset identifiers appear only in the body text (data availability section), not as a reference-list entry.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“All raw sequencing data generated in this study have been submitted to the NCBI BioProject database ( https://www.ncbi.nlm.nih.gov/bioproject/ ) under accession number PRJNA577507. This whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under the accession WUAV00000000 ; the version described in this paper is version WUAV01000000 . The reference genome assembly is available at the NCBI Genome database ( https://www.ncbi.nlm.nih.gov/genome/ ) under accession number GCA_010183535.1.”
The data availability statement points to public repositories with specific accessions, fitting Colavizza category 3.
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1 Available genome assemblies of C. remanei”
Table 1 provides an itemised inventory of the genome assemblies, including the new assembly's statistics.
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“All raw sequencing data generated in this study have been submitted to the NCBI BioProject database ( https://www.ncbi.nlm.nih.gov/bioproject/ ) under accession number PRJNA577507. This whole-genome shotgun project has been deposited at DDBJ/ENA/GenBank under the accession WUAV00000000 ; the version described in this paper is version WUAV01000000 . The reference genome assembly is available at the NCBI Genome database ( https://www.ncbi.nlm.nih.gov/genome/ ) under accession number GCA_010183535.1.”
The data are deposited in public repositories with no stated precondition, making them openly accessible.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“All raw sequencing data generated in this study have been submitted to the NCBI BioProject database ( https://www.ncbi.nlm.nih.gov/bioproject/ ) under accession number PRJNA577507.”
The paper states where the data are deposited but does not label the access level (e.g., open access, restricted access) for the data itself. [majority verdict 'partial' (4/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject, so no gatekeeper is named or required.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
No sentence addresses how long the data will remain available or when they become obtainable. [majority verdict 'no' (3/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name a file format for the released data; repository formats are implied but not stated.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is explicitly named (e.g., MIAME, MINSEQE, or a FAIRsharing-registered vocabulary).
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“C. elegans (PRJNA13758)”
The paper references an external resource (C. elegans genome) with a persistent identifier (PRJNA13758).
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No license or reuse terms are stated for the dataset; the copyright notice applies to the article only.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“the version described in this paper is version WUAV01000000”
The paper explicitly gives a version token for the GenBank deposit.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Supplementary custom scripts to estimate statistics, and generate main and supplemental figures, are available on GitHub ( https://github.com/phillips-lab/C.remanei_genome ).”
A GitHub URL is provided for the custom scripts, which is a machine-resolvable locator.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was supported by grants from the National Institutes of Health (R01 GM-102511 and R35 GM-131838) to P.C.P.”
The paper includes specific grant numbers from the funder.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The primary contigs were generated from two PacBio single-molecule real-time (SMRT) Cells using the FALCON assembly ( Chin et al. 2016 ) followed by Arrow polishing”
The paper names specific instruments and software (PacBio, FALCON) used to generate the data. [majority verdict 'yes' (4/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Table 1 Available genome assemblies of C. remanei”
Variable- and file-level definitions are provided inside the article (Table 1), but no documentation object is said to travel with the data.
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.590
From this paper's citation signal
Citation Network Contribution
0.619
From 27 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 38 citers.
NIGMS NIH HHS
Grant: R35 GM131838
NIGMS NIH HHS
Grant: R01 GM102511
FWCI
7.13
Citation Percentile
1.0%
Influential Citations
4
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals