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KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

Frontiers in Bioengineering and Biotechnology(2020)10.3389/fbioe.2020.556413Source: DataRank Database

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis is a research paper published in Frontiers in Bioengineering and Biotechnology (2020). On theSindex it has a DataRank of 0. It has been cited 26 times.

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Enrichment:Funding (3 grants)OA: goldTopics (37)IDs (PubMed, PMC)Annotations (1)

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Authors (9)

Daniel A. Acheampong ORCID,Preecha Patumcharoenpol ORCID,Piroon Jenjaroenpun ORCID,Thidathip Wongsurawat ORCID,Se‐Ran Jun ORCID

Live enrichment

PubMed:33072720 PMC:PMC7538862

NIGMS NIH HHS

Grant: P20 GM125503

National Institutes of Health

Grant: 5P20GM125503-04

Center for Musculoskeletal Disease Research (CMDR)

National Institute of General Medical Sciences

goldLicense: cc-by

publisherhttps://doi.org/10.3389/fbioe.2020.556413

publisherhttps://www.frontiersin.org/article/10.3389/fbioe.2020.556413/full

repositoryhttps://doaj.org/article/ee2c66a02b28431bb1cb32c435b6b229

repositoryhttps://www.ncbi.nlm.nih.gov/pmc/articles/7538862

Europe_PMChttps://europepmc.org/articles/PMC7538862

Fields of Study

0301 basic medicine03 medical and health sciences0303 health sciences

Keywords

Comparative genomicsSpecies identificationk-merPhylogenomicsAlignment-freeCladeArtificial intelligenceHybrid genome assemblyGeneComputational biologyInferenceSequence alignmentBiochemistry, Genetics and Molecular BiologyGeneticsPeptide sequencephylogenetic treeRNA Sequencing Data AnalysisMolecular BiologyBiologyGenomeEcologyBioengineering and BiotechnologyLife SciencesPhylogenetic AnalysisEcology and Evolution of Viruses in EcosystemsComputer scienceDNA Barcoding for Food Authentication and Fraud DetectionFOS: Biological sciencesWhole genome sequencingEnvironmental SciencePhysical SciencesMultiple sequence alignmentTP248.13-248.65Biotechnology

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis

FAIR Checklist

Authors (9)

Funding (3 grants)

Open Access

Topics

Annotations (Europe PMC)