Use of a Candida albicans SC5314 PacBio HiFi reads dataset to close gaps in the reference genome assembly, reveal a subtelomeric gene family, and produce accurate phased allelic sequences is a dataset published in Frontiers in Cellular and Infection Microbiology (2024). On theSindex it has a DataRank of 0.315, placing it in the top 53.5% of the data-sharing corpus. It has been cited 6 times, with 5 citing works in its 1-hop citation network. Its calibrated FAIR score is 65/100.
Ranks in the top 54% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The HiFi reads data set was deposited into the NCBI Sequence Read Archive (SRA) under accession number SRR23724250.”
The paper provides a repository accession (SRR23724250) which is a persistent identifier scheme.
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The HiFi reads data set was deposited into the NCBI Sequence Read Archive (SRA) under accession number SRR23724250.”
The paper names a data repository (NCBI Sequence Read Archive) as the holder.
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The HiFi reads data set was deposited into the NCBI Sequence Read Archive (SRA) under accession number SRR23724250.”
The dataset identifiers appear only in the body text, not in the reference list.
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material.”— not found in the paper; verdict downgraded
The statement points to the article and supplementary material for repository names and accessions, not directly to a repository record, so it is category 2 (data contained within the article). [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (3/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“The HiFi reads data set had 324,036 reads with a mean length of 14,905 bp.”
The dataset content is described in running prose, not in an itemized inventory. [majority verdict 'partial' (2/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The HiFi reads data set was deposited into the NCBI Sequence Read Archive (SRA) under accession number SRR23724250.”
The paper states the data are deposited in public repositories with no stated precondition.
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“The HiFi reads data set was deposited into the NCBI Sequence Read Archive (SRA) under accession number SRR23724250.”
The paper describes the deposit actions but does not label the access level with a standard vocabulary term. [majority verdict 'partial' (3/5 passes agreed)]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are not sensitive or human-subject; no gatekeeper is needed or mentioned.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
“The datasets presented in this study can be found in online repositories.”
The statement indicates availability timing (now) but says nothing about retention duration. [majority verdict 'partial' (4/5 passes agreed)]
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not explicitly name a file format for the released data. [majority verdict 'no' (4/5 passes agreed)]
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No data or metadata community standard is named in the paper.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“The haploid C. albicans SC5314 reference sequence (ASM18296v3; GCF_000182965.3) was downloaded from the National Center for Biotechnology Information (NCBI) website on October 10, 2023”
The paper provides identifiers for external resources used (reference genome, RNA-Seq datasets). [majority verdict 'yes' (3/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
No reuse license or terms are named for the data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
“The primary contigs from hifiasm were used for further analysis and deposited into NCBI (ASM3268872v1; GCA_032688725.1).”— not found in the paper; verdict downgraded
The assembly version token (ASM3268872v1) is provided. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
“Supplementary File S1 offers the analysis programs and commands used to generate this figure with the goal of enabling novice users to locate genes of interest and deduce their allelic sequences from the PacBio HiFi reads data set.”
The code is provided as supplementary material, not as a versioned repository locator.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“This work was funded by R15 DE026401 from the National Institute of Dental and Craniofacial Research, National Institutes of Health.”
The paper includes a specific grant number.
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“The library was sequenced on a single-molecule real-time (SMRT) cell 8M on a PacBio Sequel IIe system using a Sequel II Binding Kit 2.2, the circular consensus sequencing (CCS) mode, and a 30-h movie time.”
The paper names specific instruments, kits, and software used to produce the data.
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Comparison among C. albicans SC5314 ALS gene sequences available in public databases.”
Table 2 inside the article defines the ALS allele sequences, but no documentation object is said to accompany the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.292
From this paper's citation signal
Citation Network Contribution
0.0230
From 2 citing papers with measurable signal
Ranked by each citer's contribution to N(p) — log1p(Cq) divided by its reference count — out of 5 citers.
NIDCR NIH HHS
Grant: R15 DE026401
National Institutes of Health
Grant: 1R15DE026401-01
Enhancing Undergraduate Research: Genome Data Mining and Laboratory Experimentation to Reveal the Fungal Agglutinin-Like Sequence Family
National Institute of Dental and Craniofacial Research
FWCI
2.09
Citation Percentile
0.9%
Citation Trend
Fields of Study
MeSH Terms
Keywords