The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing is a dataset published in Frontiers in Cellular and Infection Microbiology (2024). On theSindex it has a DataRank of 0.104, placing it in the top 77.8% of the data-sharing corpus. It has been cited 1 time, with 1 citing works in its 1-hop citation network. Its calibrated FAIR score is 29/100.
Ranks in the top 78% for downstream scientific impact
Linked data & code
DataRank reads this dataset's downstream impact straight off the citation graph — no black box, no proprietary weighting. How is this computed?
FAIR checklist signals are shown for context only and do not affect DataRank scoring.
Full FAIR picture · advisory
The headline score is computed from the scored criteria — the fact-shaped checks (a repository, an accession, a licence) that two independent models agree on. The advisory criteria below are real FAIR guidance but rest on judgment calls that models read differently, so they inform without moving the number.
“The complete sequence of the chromosome of M. faucium UMCG-MFM1 and raw sequencing reads have been deposited in the GenBank database and are available under the Bioproject PRJNA783792.”— not found in the paper; verdict downgraded
PRJNA783792 is a BioProject accession, a persistent identifier scheme registered in identifiers.org. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F1-01D — FAIR Data Maturity Model: 'Data is identified by a persistent identifier' (priorit · RDA-F1-02D — FAIR Data Maturity Model: 'Data is identified by a globally unique identifier' · FsF-F1-02D — F-UJI/FAIRsFAIR: 'Data is assigned a persistent identifier'
“The complete sequence of the chromosome of M. faucium UMCG-MFM1 and raw sequencing reads have been deposited in the GenBank database and are available under the Bioproject PRJNA783792.”— not found in the paper; verdict downgraded
GenBank is a data repository listed in re3data/FAIRsharing. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F4-01M — FAIR Data Maturity Model: metadata is offered so it can be harvested and indexed ( · NIH DMS Policy Element 4 (NOT-OD-21-014) — name the repository where data will be archived · NSTC Desirable Characteristics of Data Repositories (2022) — 'Long-Term Sustainability', 'Reten
“The complete sequence of the chromosome of M. faucium UMCG-MFM1 and raw sequencing reads have been deposited in the GenBank database and are available under the Bioproject PRJNA783792.”— not found in the paper; verdict downgraded
The dataset identifier (PRJNA783792) appears only in the body text, not in the reference list. [downgraded to 'no' — no verifiable quote from the paper] [majority verdict 'no' (4/5 passes agreed)]
FORCE11 Joint Declaration of Data Citation Principles (2014) — data should be cited as a first- · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes · FsF-F3-01M — F-UJI: 'Metadata includes the identifier of the data it describes'
Advisory · not in the published score
“The complete sequence of the chromosome of M. faucium UMCG-MFM1 and raw sequencing reads have been deposited in the GenBank database and are available under the Bioproject PRJNA783792.”— not found in the paper; verdict downgraded
The data-availability statement points to a repository record with an accession (PRJNA783792), fulfilling Colavizza category 3. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (4/5 passes agreed)]
Colavizza, Hrynaszkiewicz, Staden, Whitaker & McGillivray (2020), 'The citation advantage of li · Springer Nature research data policy — Data Availability Statements: standard statement templat · RDA-F3-01M — metadata clearly and explicitly includes the identifier of the data it describes
“Table 1 Gene content of the chromosome of M. faucium UMCG-MFM1. Features annotated Number of features Genes (total) 729 Coding DNA sequences (total) 690 ...”— not found in the paper; verdict downgraded
Table 1 provides an itemised inventory of the dataset's features (gene count, CDS, RNAs, etc.), constituting a structured description of the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-F2-01M — 'Rich metadata is provided to allow discovery' (priority Essential) · FsF-F2-01M — F-UJI: 'Metadata includes descriptive core elements to support data findability' · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data'
“The complete sequence of the chromosome of M. faucium UMCG-MFM1 and raw sequencing reads have been deposited in the GenBank database and are available under the Bioproject PRJNA783792.”— not found in the paper; verdict downgraded
The paper states the data are deposited in a public repository (GenBank) and are available under an accession, with no precondition mentioned. [downgraded to 'partial' — no verifiable quote from the paper]
RDA-A1.1-01D — 'Data is accessible through a free access protocol' · FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · NSTC Desirable Characteristics of Data Repositories (2022) — 'Free and Easy Access'
Advisory · not in the published score
“available under the Bioproject PRJNA783792”— not found in the paper; verdict downgraded
The paper describes the action of obtaining the data via the repository and accession, but does not explicitly label the access level (e.g., 'open access'). [downgraded to 'no' — no verifiable quote from the paper]
FsF-A1-01M — F-UJI: 'Metadata contains access level and access conditions of the data' · RDA-A1-01M — metadata contains information to enable the user to get access to the data · COAR Controlled Vocabularies — Access Rights v1.0 (open / embargoed / restricted / metadata-onl
The data are bacterial genome sequences from a patient sample, but the paper does not treat them as sensitive human-subject data and mentions no gatekeeper.
NIH Genomic Data Sharing Policy (NOT-OD-14-124) — controlled-access via a Data Access Committee · RDA-A1.2-01D — 'Data is accessible through an access protocol that supports authentication and · NIH DMS Policy Element 5 (NOT-OD-21-014) — Access, Distribution, or Reuse Considerations (conse
The paper does not state how long the data will be retained or when they become available; only that they are deposited.
NIH DMS Plan Element 4 (NOT-OD-21-014) — Data Preservation, Access, and Associated Timelines · NSTC Desirable Characteristics (2022), Organizational Infrastructure: 'Retention Policy' · RDA-A2-01M — 'Metadata is guaranteed to remain available after data is no longer available'
The paper does not name any file format for the deposited data.
FsF-R1.3-02D — F-UJI: 'Data is available in a file format recommended by the target research co · RDA-R1.3-02D — data is expressed in a machine-understandable community standard · RDA-I1-01D — data uses a knowledge representation expressed in a standardised format
Advisory · not in the published score
No community data standard (e.g., MIAME, ISA-Tab, an ontology) is named for the data; the NCBI Prokaryotic Genome Annotation Pipeline is a tool, not a data standard.
RDA-R1.3-01M — 'Metadata complies with a community standard' (priority Essential) · RDA-R1.3-01D — 'Data complies with a community standard' · RDA-I2-01M — '(Meta)data use vocabularies that follow FAIR principles'
“GenBank accession number: NC_001942”
The paper provides external identifiers such as GenBank accession NC_001942 for the MAV1 phage, a resource other than the study's own dataset. [majority verdict 'yes' (4/5 passes agreed)]
RDA-I3-01M — '(meta)data include references to other (meta)data' · RDA-I3-03M — 'metadata includes qualified references to other metadata' · FsF-I3-01M — F-UJI: 'Metadata includes links between the data and its related entities'
The paper attaches a CC BY license to the article, but no license is stated for the deposited data.
RDA-R1.1-01M — 'Metadata includes information about the licence under which the data can be reu · RDA-R1.1-02M — 'Metadata refers to a standard reuse licence' · RDA-R1.1-03M — 'Metadata refers to a machine-understandable reuse licence'
The data are identified only by a BioProject/GenBank accession; no version string or date is provided to pin a specific snapshot.
DataCite Metadata Schema 4.6 — the 'Version' property · RDA-R1.2-01M — provenance information (which version was used is provenance) · NSTC Desirable Characteristics of Data Repositories (2022) — 'Provenance', 'Retention Policy'
The paper does not mention any custom code; only commercial software is used, and code availability is not addressed.
NIH DMS Policy Element 2 (NOT-OD-21-014) — 'Related Tools, Software and/or Code' · FAIR4RS Principles v1.0 (Chue Hong et al., 2022; RDA/FORCE11/ReSA) — FAIR Principles for Resear · FORCE11 Software Citation Principles (Smith, Katz & Niemeyer, 2016, PeerJ CS 2:e86)
“National Institutes of Health grant 5R44GM122120-02”
The paper names a specific grant number (5R44GM122120-02) from the NIH. [majority verdict 'yes' (4/5 passes agreed)]
DataCite Metadata Schema 4.6 — 'FundingReference' property (funderName, funderIdentifier, award · Crossref Funder Registry — canonical funder identifiers for funding metadata · RDA-F2-01M — rich metadata provided to allow discovery (funding is part of the descriptive reco
Advisory · not in the published score
“Extraction of genomic DNA The pus sample was homogenized with a TissueLyser II (Qiagen, Germantown, MD, USA) and total DNA was purified using the DNeasy Blood & Tissue Kit (Qiagen, Hilden, Germany).”— not found in the paper; verdict downgraded
The text names specific instruments, kits, and software (e.g., TissueLyser II, DNeasy Blood & Tissue Kit, NovaSeq 6000, MinION, SeqMan NGen) used to produce the data. [downgraded to 'partial' — no verifiable quote from the paper] [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1.2-01M — 'Metadata includes provenance information according to community- specific standa · FsF-R1.2-01M — F-UJI: 'Metadata includes provenance information about data creation or generati · W3C PROV-O (W3C Recommendation, 2013) — the entity/activity/agent model of provenance
“Gene content of the chromosome of M. faucium UMCG-MFM1”
The variable definitions (gene content) are provided inside the article in Table 1, not in a separate documentation file shipped with the data. [majority verdict 'partial' (3/5 passes agreed)]
RDA-R1-01M — '(Meta)data are richly described with a plurality of accurate and relevant attribu · FsF-R1-01MD — F-UJI: 'Metadata specifies the content of the data' · NIH DMS Policy Element 3 (NOT-OD-21-014) — Standards (documentation and metadata to accompany t
Calibrated FAIR score — a parallel quality metric, independent of the DataRank citation score. See the full evaluation →
Base Score Contribution
0.104
From this paper's citation signal
Citation Network Contribution
0
From 0 citing papers with measurable signal
This paper's DataRank is currently driven only by its base citation score. None of the citing papers had measurable citation signal.
Learn more about DataRank methodology →NIGMS NIH HHS
Grant: R44 GM122120
National Institutes of Health
Grant: 5R44GM122120-02
Complete genome de novo assembly software for the emerging long read sequencing era
FWCI
0.25
Citation Percentile
0.5%
Citation Trend
Fields of Study
MeSH Terms
Keywords
Sustainable Development Goals